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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7LVV

Cryoem structure drdv-dna complex

PDB DOI: 10.2210/pdb7lvv/pdb

Classification: HYDROLASE/DNA
Organism(s): Deinococcus Wulumuqiensis , Synthetic Construct

Deposited: 2021-02-26
Deposition Author(s): Shen, B.W. , Stoddard, B.L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.25 Å

7lvv
Literature

Cryoem structure drdv-dna complex

Shen, B.W. , Stoddard, B.L.

Primary Citation of Related Structures: 7LVV


Proteins
Molecule Chains Sequence Length Organism Sequence
Site-specific DNA-methyltransferase (adenine-specific) A 1029 Deinococcus Wulumuqiensis , Synthetic Construct MSLQLVKKFQKRLEDIVAYGGTRNESSVRAAFQQLLSDWAEGSGLRLITEVTQKAVAGNNVRPDGTLKDSLQQSRGYWESKDEADTLDDEIQKKLAKGYPRDNIIFEDSRLAVLMQNGEEVQRVDMGDAGALAGLLKLFFEFEPPQVLEFRKAVDHFKDEMPHLLKILREAADAAEQKADYRGERDHFVEIAKEAINPDFSPRDAREMLIQHILTGDLFTSVFDNAQYHEDNNIAQQLQQLAATFYKGPVKRDIAERTKRYYGAIQAAAAQIADHHEKQRFLKALYENFYRAYNPAGAERLGIFYTPGEIVRFMIEATDTLLEKHFQKELADKGVEILDPATGTGTFITELIDFLPKAKLEQKYREELHCNELALLPYYIANLNIEATYAQKMGRYEEFRNIVLVDTLDNTGFGVHGQQSGLFGSVTAENLERAKRQNARPVRVIIGNPPYRANQANENDNNKNREYKEIDRRIKATYVAASTAQKTKLYDMYSRFLRWATDRLKEDGIVAFVSNSSFIDSRTFDGFRKEVVKDFDHIYILDMKGNANTSGERRKREGGNVFNDQIKVGVAVYFLVRSAAGKRKSKDTKIWYHAVPDFWRAREKLEWLKTTKFEDIEFDHIRPDAKHNWLGQVDEENDWNEFLPVADKDTKQAKGLGQERAIFKLYSLGVVTNRDEWVYSRAEDELADKVRYFIGRYNEIIKLPLGDLMSRNWEGDIKMTRATIADAQSRKSYSLEKNSIVPSLYRPFDVLKMYFSKNLNEMQYQMPSIFPKGVGENVVIALSGSPAAKPFQVLATDILPSLDLLEKTQCLPFYRYTMNGERLNNITDYALKAFQTHYADTSISREDIFHYVYAVLHHPAYREKYALNLRQEFPRIPFYPEFGRWAAWGRELMALHIGFESVAPYPLKRTDEPPKNDTPEALALAKKARLKVQRDAAKQPTGAVELDGLTTLAGIPAAAWAYKLGNRSALEWVLERHKETTPKDATIREKFNTYRFADHKERVIDLLARVTTVSVETVRIVGEMPAETM
Site-specific DNA-methyltransferase (adenine-specific) B 1029 Deinococcus Wulumuqiensis , Synthetic Construct MSLQLVKKFQKRLEDIVAYGGTRNESSVRAAFQQLLSDWAEGSGLRLITEVTQKAVAGNNVRPDGTLKDSLQQSRGYWESKDEADTLDDEIQKKLAKGYPRDNIIFEDSRLAVLMQNGEEVQRVDMGDAGALAGLLKLFFEFEPPQVLEFRKAVDHFKDEMPHLLKILREAADAAEQKADYRGERDHFVEIAKEAINPDFSPRDAREMLIQHILTGDLFTSVFDNAQYHEDNNIAQQLQQLAATFYKGPVKRDIAERTKRYYGAIQAAAAQIADHHEKQRFLKALYENFYRAYNPAGAERLGIFYTPGEIVRFMIEATDTLLEKHFQKELADKGVEILDPATGTGTFITELIDFLPKAKLEQKYREELHCNELALLPYYIANLNIEATYAQKMGRYEEFRNIVLVDTLDNTGFGVHGQQSGLFGSVTAENLERAKRQNARPVRVIIGNPPYRANQANENDNNKNREYKEIDRRIKATYVAASTAQKTKLYDMYSRFLRWATDRLKEDGIVAFVSNSSFIDSRTFDGFRKEVVKDFDHIYILDMKGNANTSGERRKREGGNVFNDQIKVGVAVYFLVRSAAGKRKSKDTKIWYHAVPDFWRAREKLEWLKTTKFEDIEFDHIRPDAKHNWLGQVDEENDWNEFLPVADKDTKQAKGLGQERAIFKLYSLGVVTNRDEWVYSRAEDELADKVRYFIGRYNEIIKLPLGDLMSRNWEGDIKMTRATIADAQSRKSYSLEKNSIVPSLYRPFDVLKMYFSKNLNEMQYQMPSIFPKGVGENVVIALSGSPAAKPFQVLATDILPSLDLLEKTQCLPFYRYTMNGERLNNITDYALKAFQTHYADTSISREDIFHYVYAVLHHPAYREKYALNLRQEFPRIPFYPEFGRWAAWGRELMALHIGFESVAPYPLKRTDEPPKNDTPEALALAKKARLKVQRDAAKQPTGAVELDGLTTLAGIPAAAWAYKLGNRSALEWVLERHKETTPKDATIREKFNTYRFADHKERVIDLLARVTTVSVETVRIVGEMPAETM
Site-specific DNA-methyltransferase (adenine-specific) C 1029 Deinococcus Wulumuqiensis , Synthetic Construct MSLQLVKKFQKRLEDIVAYGGTRNESSVRAAFQQLLSDWAEGSGLRLITEVTQKAVAGNNVRPDGTLKDSLQQSRGYWESKDEADTLDDEIQKKLAKGYPRDNIIFEDSRLAVLMQNGEEVQRVDMGDAGALAGLLKLFFEFEPPQVLEFRKAVDHFKDEMPHLLKILREAADAAEQKADYRGERDHFVEIAKEAINPDFSPRDAREMLIQHILTGDLFTSVFDNAQYHEDNNIAQQLQQLAATFYKGPVKRDIAERTKRYYGAIQAAAAQIADHHEKQRFLKALYENFYRAYNPAGAERLGIFYTPGEIVRFMIEATDTLLEKHFQKELADKGVEILDPATGTGTFITELIDFLPKAKLEQKYREELHCNELALLPYYIANLNIEATYAQKMGRYEEFRNIVLVDTLDNTGFGVHGQQSGLFGSVTAENLERAKRQNARPVRVIIGNPPYRANQANENDNNKNREYKEIDRRIKATYVAASTAQKTKLYDMYSRFLRWATDRLKEDGIVAFVSNSSFIDSRTFDGFRKEVVKDFDHIYILDMKGNANTSGERRKREGGNVFNDQIKVGVAVYFLVRSAAGKRKSKDTKIWYHAVPDFWRAREKLEWLKTTKFEDIEFDHIRPDAKHNWLGQVDEENDWNEFLPVADKDTKQAKGLGQERAIFKLYSLGVVTNRDEWVYSRAEDELADKVRYFIGRYNEIIKLPLGDLMSRNWEGDIKMTRATIADAQSRKSYSLEKNSIVPSLYRPFDVLKMYFSKNLNEMQYQMPSIFPKGVGENVVIALSGSPAAKPFQVLATDILPSLDLLEKTQCLPFYRYTMNGERLNNITDYALKAFQTHYADTSISREDIFHYVYAVLHHPAYREKYALNLRQEFPRIPFYPEFGRWAAWGRELMALHIGFESVAPYPLKRTDEPPKNDTPEALALAKKARLKVQRDAAKQPTGAVELDGLTTLAGIPAAAWAYKLGNRSALEWVLERHKETTPKDATIREKFNTYRFADHKERVIDLLARVTTVSVETVRIVGEMPAETM
Site-specific DNA-methyltransferase (adenine-specific) D 1029 Deinococcus Wulumuqiensis , Synthetic Construct MSLQLVKKFQKRLEDIVAYGGTRNESSVRAAFQQLLSDWAEGSGLRLITEVTQKAVAGNNVRPDGTLKDSLQQSRGYWESKDEADTLDDEIQKKLAKGYPRDNIIFEDSRLAVLMQNGEEVQRVDMGDAGALAGLLKLFFEFEPPQVLEFRKAVDHFKDEMPHLLKILREAADAAEQKADYRGERDHFVEIAKEAINPDFSPRDAREMLIQHILTGDLFTSVFDNAQYHEDNNIAQQLQQLAATFYKGPVKRDIAERTKRYYGAIQAAAAQIADHHEKQRFLKALYENFYRAYNPAGAERLGIFYTPGEIVRFMIEATDTLLEKHFQKELADKGVEILDPATGTGTFITELIDFLPKAKLEQKYREELHCNELALLPYYIANLNIEATYAQKMGRYEEFRNIVLVDTLDNTGFGVHGQQSGLFGSVTAENLERAKRQNARPVRVIIGNPPYRANQANENDNNKNREYKEIDRRIKATYVAASTAQKTKLYDMYSRFLRWATDRLKEDGIVAFVSNSSFIDSRTFDGFRKEVVKDFDHIYILDMKGNANTSGERRKREGGNVFNDQIKVGVAVYFLVRSAAGKRKSKDTKIWYHAVPDFWRAREKLEWLKTTKFEDIEFDHIRPDAKHNWLGQVDEENDWNEFLPVADKDTKQAKGLGQERAIFKLYSLGVVTNRDEWVYSRAEDELADKVRYFIGRYNEIIKLPLGDLMSRNWEGDIKMTRATIADAQSRKSYSLEKNSIVPSLYRPFDVLKMYFSKNLNEMQYQMPSIFPKGVGENVVIALSGSPAAKPFQVLATDILPSLDLLEKTQCLPFYRYTMNGERLNNITDYALKAFQTHYADTSISREDIFHYVYAVLHHPAYREKYALNLRQEFPRIPFYPEFGRWAAWGRELMALHIGFESVAPYPLKRTDEPPKNDTPEALALAKKARLKVQRDAAKQPTGAVELDGLTTLAGIPAAAWAYKLGNRSALEWVLERHKETTPKDATIREKFNTYRFADHKERVIDLLARVTTVSVETVRIVGEMPAETM

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (28-MER) e 29 NA CAGCCCATGGACCCAGAACCACCCACCCG
DNA (28-MER) g 29 NA CAGCCCATGGACCCAGAACCACCCACCCG
DNA (27-MER) f 29 NA GGGTGGGTGGTTCTGGGTCCATGGGCTGC
DNA (27-MER) h 29 NA GGGTGGGTGGTTCTGGGTCCATGGGCTGC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-02-26
Deposition Author(s): Shen, B.W. , Stoddard, B.L.