PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7LO5

Cryoem structure drdv-dna complex

PDB DOI: 10.2210/pdb7lo5/pdb

Classification: HYDROLASE/DNA
Organism(s): Deinococcus Wulumuqiensis , Synthetic Construct

Deposited: 2021-02-09
Deposition Author(s): Shen, B.W. , Stoddard, B.L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.86 Å

7lo5
Literature

Cryoem structure drdv-dna complex

Shen, B.W. , Stoddard, B.L.

Primary Citation of Related Structures: 7LO5


Proteins
Molecule Chains Sequence Length Organism Sequence
Site-specific DNA-methyltransferase (adenine-specific) A 1029 Deinococcus Wulumuqiensis , Synthetic Construct MSLQLVKKFQKRLEDIVAYGGTRNESSVRAAFQQLLSDWAEGSGLRLITEVTQKAVAGNNVRPDGTLKDSLQQSRGYWESKDEADTLDDEIQKKLAKGYPRDNIIFEDSRLAVLMQNGEEVQRVDMGDAGALAGLLKLFFEFEPPQVLEFRKAVDHFKDEMPHLLKILREAADAAEQKADYRGERDHFVEIAKEAINPDFSPRDAREMLIQHILTGDLFTSVFDNAQYHEDNNIAQQLQQLAATFYKGPVKRDIAERTKRYYGAIQAAAAQIADHHEKQRFLKALYENFYRAYNPAGAERLGIFYTPGEIVRFMIEATDTLLEKHFQKELADKGVEILDPATGTGTFITELIDFLPKAKLEQKYREELHCNELALLPYYIANLNIEATYAQKMGRYEEFRNIVLVDTLDNTGFGVHGQQSGLFGSVTAENLERAKRQNARPVRVIIGNPPYRANQANENDNNKNREYKEIDRRIKATYVAASTAQKTKLYDMYSRFLRWATDRLKEDGIVAFVSNSSFIDSRTFDGFRKEVVKDFDHIYILDMKGNANTSGERRKREGGNVFNDQIKVGVAVYFLVRSAAGKRKSKDTKIWYHAVPDFWRAREKLEWLKTTKFEDIEFDHIRPDAKHNWLGQVDEENDWNEFLPVADKDTKQAKGLGQERAIFKLYSLGVVTNRDEWVYSRAEDELADKVRYFIGRYNEIIKLPLGDLMSRNWEGDIKMTRATIADAQSRKSYSLEKNSIVPSLYRPFDVLKMYFSKNLNEMQYQMPSIFPKGVGENVVIALSGSPAAKPFQVLATDILPSLDLLEKTQCLPFYRYTMNGERLNNITDYALKAFQTHYADTSISREDIFHYVYAVLHHPAYREKYALNLRQEFPRIPFYPEFGRWAAWGRELMALHIGFESVAPYPLKRTDEPPKNDTPEALALAKKARLKVQRDAAKQPTGAVELDGLTTLAGIPAAAWAYKLGNRSALEWVLERHKETTPKDATIREKFNTYRFADHKERVIDLLARVTTVSVETVRIVGEMPAETM
Site-specific DNA-methyltransferase (adenine-specific) B 1029 Deinococcus Wulumuqiensis , Synthetic Construct MSLQLVKKFQKRLEDIVAYGGTRNESSVRAAFQQLLSDWAEGSGLRLITEVTQKAVAGNNVRPDGTLKDSLQQSRGYWESKDEADTLDDEIQKKLAKGYPRDNIIFEDSRLAVLMQNGEEVQRVDMGDAGALAGLLKLFFEFEPPQVLEFRKAVDHFKDEMPHLLKILREAADAAEQKADYRGERDHFVEIAKEAINPDFSPRDAREMLIQHILTGDLFTSVFDNAQYHEDNNIAQQLQQLAATFYKGPVKRDIAERTKRYYGAIQAAAAQIADHHEKQRFLKALYENFYRAYNPAGAERLGIFYTPGEIVRFMIEATDTLLEKHFQKELADKGVEILDPATGTGTFITELIDFLPKAKLEQKYREELHCNELALLPYYIANLNIEATYAQKMGRYEEFRNIVLVDTLDNTGFGVHGQQSGLFGSVTAENLERAKRQNARPVRVIIGNPPYRANQANENDNNKNREYKEIDRRIKATYVAASTAQKTKLYDMYSRFLRWATDRLKEDGIVAFVSNSSFIDSRTFDGFRKEVVKDFDHIYILDMKGNANTSGERRKREGGNVFNDQIKVGVAVYFLVRSAAGKRKSKDTKIWYHAVPDFWRAREKLEWLKTTKFEDIEFDHIRPDAKHNWLGQVDEENDWNEFLPVADKDTKQAKGLGQERAIFKLYSLGVVTNRDEWVYSRAEDELADKVRYFIGRYNEIIKLPLGDLMSRNWEGDIKMTRATIADAQSRKSYSLEKNSIVPSLYRPFDVLKMYFSKNLNEMQYQMPSIFPKGVGENVVIALSGSPAAKPFQVLATDILPSLDLLEKTQCLPFYRYTMNGERLNNITDYALKAFQTHYADTSISREDIFHYVYAVLHHPAYREKYALNLRQEFPRIPFYPEFGRWAAWGRELMALHIGFESVAPYPLKRTDEPPKNDTPEALALAKKARLKVQRDAAKQPTGAVELDGLTTLAGIPAAAWAYKLGNRSALEWVLERHKETTPKDATIREKFNTYRFADHKERVIDLLARVTTVSVETVRIVGEMPAETM
Site-specific DNA-methyltransferase (adenine-specific) C 1029 Deinococcus Wulumuqiensis , Synthetic Construct MSLQLVKKFQKRLEDIVAYGGTRNESSVRAAFQQLLSDWAEGSGLRLITEVTQKAVAGNNVRPDGTLKDSLQQSRGYWESKDEADTLDDEIQKKLAKGYPRDNIIFEDSRLAVLMQNGEEVQRVDMGDAGALAGLLKLFFEFEPPQVLEFRKAVDHFKDEMPHLLKILREAADAAEQKADYRGERDHFVEIAKEAINPDFSPRDAREMLIQHILTGDLFTSVFDNAQYHEDNNIAQQLQQLAATFYKGPVKRDIAERTKRYYGAIQAAAAQIADHHEKQRFLKALYENFYRAYNPAGAERLGIFYTPGEIVRFMIEATDTLLEKHFQKELADKGVEILDPATGTGTFITELIDFLPKAKLEQKYREELHCNELALLPYYIANLNIEATYAQKMGRYEEFRNIVLVDTLDNTGFGVHGQQSGLFGSVTAENLERAKRQNARPVRVIIGNPPYRANQANENDNNKNREYKEIDRRIKATYVAASTAQKTKLYDMYSRFLRWATDRLKEDGIVAFVSNSSFIDSRTFDGFRKEVVKDFDHIYILDMKGNANTSGERRKREGGNVFNDQIKVGVAVYFLVRSAAGKRKSKDTKIWYHAVPDFWRAREKLEWLKTTKFEDIEFDHIRPDAKHNWLGQVDEENDWNEFLPVADKDTKQAKGLGQERAIFKLYSLGVVTNRDEWVYSRAEDELADKVRYFIGRYNEIIKLPLGDLMSRNWEGDIKMTRATIADAQSRKSYSLEKNSIVPSLYRPFDVLKMYFSKNLNEMQYQMPSIFPKGVGENVVIALSGSPAAKPFQVLATDILPSLDLLEKTQCLPFYRYTMNGERLNNITDYALKAFQTHYADTSISREDIFHYVYAVLHHPAYREKYALNLRQEFPRIPFYPEFGRWAAWGRELMALHIGFESVAPYPLKRTDEPPKNDTPEALALAKKARLKVQRDAAKQPTGAVELDGLTTLAGIPAAAWAYKLGNRSALEWVLERHKETTPKDATIREKFNTYRFADHKERVIDLLARVTTVSVETVRIVGEMPAETM
Site-specific DNA-methyltransferase (adenine-specific) D 1029 Deinococcus Wulumuqiensis , Synthetic Construct MSLQLVKKFQKRLEDIVAYGGTRNESSVRAAFQQLLSDWAEGSGLRLITEVTQKAVAGNNVRPDGTLKDSLQQSRGYWESKDEADTLDDEIQKKLAKGYPRDNIIFEDSRLAVLMQNGEEVQRVDMGDAGALAGLLKLFFEFEPPQVLEFRKAVDHFKDEMPHLLKILREAADAAEQKADYRGERDHFVEIAKEAINPDFSPRDAREMLIQHILTGDLFTSVFDNAQYHEDNNIAQQLQQLAATFYKGPVKRDIAERTKRYYGAIQAAAAQIADHHEKQRFLKALYENFYRAYNPAGAERLGIFYTPGEIVRFMIEATDTLLEKHFQKELADKGVEILDPATGTGTFITELIDFLPKAKLEQKYREELHCNELALLPYYIANLNIEATYAQKMGRYEEFRNIVLVDTLDNTGFGVHGQQSGLFGSVTAENLERAKRQNARPVRVIIGNPPYRANQANENDNNKNREYKEIDRRIKATYVAASTAQKTKLYDMYSRFLRWATDRLKEDGIVAFVSNSSFIDSRTFDGFRKEVVKDFDHIYILDMKGNANTSGERRKREGGNVFNDQIKVGVAVYFLVRSAAGKRKSKDTKIWYHAVPDFWRAREKLEWLKTTKFEDIEFDHIRPDAKHNWLGQVDEENDWNEFLPVADKDTKQAKGLGQERAIFKLYSLGVVTNRDEWVYSRAEDELADKVRYFIGRYNEIIKLPLGDLMSRNWEGDIKMTRATIADAQSRKSYSLEKNSIVPSLYRPFDVLKMYFSKNLNEMQYQMPSIFPKGVGENVVIALSGSPAAKPFQVLATDILPSLDLLEKTQCLPFYRYTMNGERLNNITDYALKAFQTHYADTSISREDIFHYVYAVLHHPAYREKYALNLRQEFPRIPFYPEFGRWAAWGRELMALHIGFESVAPYPLKRTDEPPKNDTPEALALAKKARLKVQRDAAKQPTGAVELDGLTTLAGIPAAAWAYKLGNRSALEWVLERHKETTPKDATIREKFNTYRFADHKERVIDLLARVTTVSVETVRIVGEMPAETM

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (28-MER) e 29 NA CAGCCCATGGACCCAGAACCACCCACCCG
DNA (28-MER) g 29 NA CAGCCCATGGACCCAGAACCACCCACCCG
DNA (28-MER) i 29 NA CAGCCCATGGACCCAGAACCACCCACCCG
DNA (28-MER) k 29 NA CAGCCCATGGACCCAGAACCACCCACCCG
DNA (27-MER) f 29 NA GGGTGGGTGGTTCTGGGTCCATGGGCTGC
DNA (27-MER) h 29 NA GGGTGGGTGGTTCTGGGTCCATGGGCTGC
DNA (27-MER) j 29 NA GGGTGGGTGGTTCTGGGTCCATGGGCTGC
DNA (27-MER) l 29 NA GGGTGGGTGGTTCTGGGTCCATGGGCTGC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-02-09
Deposition Author(s): Shen, B.W. , Stoddard, B.L.