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7KZG

Human mbd4 glycosylase domain bound to dna containing oxacarbenium-ion analog 1-aza-2'-deoxyribose

PDB DOI: 10.2210/pdb7kzg/pdb

Classification: HYDROLASE/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2020-12-10
Deposition Author(s): Drohat, A.C. , Pidugu, L.S. , Pozharski, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.68 Å

7kzg
Literature

Human mbd4 glycosylase domain bound to dna containing oxacarbenium-ion analog 1-aza-2'-deoxyribose

Drohat, A.C. , Pidugu, L.S. , Pozharski, E.

Primary Citation of Related Structures: 7KZG


Proteins
Molecule Chains Sequence Length Organism Sequence
Methyl-CpG-binding domain protein 4 A 174 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MGSSHHHHHHSSGLVPRGSALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*CP*AP*GP*CP*GP*(NR1)P*GP*CP*AP*GP*C)-3') c 12 NA CCAGCGXGCAGC
DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3') d 12 NA GCTGCGCGCTGG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-12-10
Deposition Author(s): Drohat, A.C. , Pidugu, L.S. , Pozharski, E.