7KRA
Cryo-em structure of saccharomyces cerevisiae er membrane protein complex bound to fab-dh4 in lipid nanodiscs
PDB DOI: 10.2210/pdb7kra/pdb
Classification: MEMBRANE PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Saccharomyces Cerevisiae
Deposited: 2020-11-19 Deposition Author(s): Bonnar, J.L. , Boydston, E.A. , Braeuning, B. , Craik, C.S. , Frost, A. , Miller-Vedam, L.E. , Popova, K.D. , Prabu, J.R. , Schirle Oakdale, N.S. , Schulman, B.A. , Sevillano, N. , Shurtleff, M.J. , Stroud, R.M. , Weissman, J.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.2 Å
Cryo-em structure of saccharomyces cerevisiae er membrane protein complex bound to fab-dh4 in lipid nanodiscs
Bonnar, J.L. , Boydston, E.A. , Braeuning, B. , Craik, C.S. , Frost, A. , Miller-Vedam, L.E. , Popova, K.D. , Prabu, J.R. , Schirle Oakdale, N.S. , Schulman, B.A. , Sevillano, N. , Shurtleff, M.J. , Stroud, R.M. , Weissman, J.S.
Primary Citation of Related Structures: 7KRA
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| ER membrane protein complex subunit 1 | A | 760 | Homo Sapiens , Saccharomyces Cerevisiae | MKITCTDLVYVFILLFLNTSCVQAVFSDDAFITDWQLANLGPWEKVIPDSRDRNRVLILSNPTETSCLVSSFNVSSGQILFRNVLPFTIDEIQLDSNDHNAMVCVNSSSNHWQKYDLHDWFLLEEGVDNAPSTTILPQSSYLNDQVSIKNNELHILDEQSKLAEWKLELPQGFNKVEYFHREDPLALVLNVNDTQYMGFSANGTELIPVWQRDEWLTNVVDYAVLDVFDSRDVELNKDMKAELDSNSLWNAYWLRLTTNWNRLINLLKENQFSPGRVFTKLLALDAKDTTVSDLKFGFAKILIVLTHDGFIGGLDMVNKGQLIWKLDLEIDQGVKMFWTDKNHDELVVFSHDGHYLTIEVTKDQPIIKSRSPLSERKTVDSVIRLNEHDHQYLIKFEDKDHLLFKLNPGKNTDVPIVANNHSSSHIFVTEHDTNGIYGYIIENDTVKQTWKKAVNSKEKMVAYSKRETTNLNTLGITLGDKSVLYKYLYPNLAAYLIANEEHHTITFNLIDTITGEILITQEHKDSPDFRFPMDIVFGEYWVVYSYFSSEPVPEQKLVVVELYESLTPDERLSNSSDNFSYDPLTGHINKPQFQTKQFIFPEIIKTMSISKTTDDITTKAIVMELENGQITYIPKLLLNARGKPAEEMAKDKKKEFMATPYTPVIPINDNFIITHFRNLLPGSDSQLISIPTNLESTSIICDLGLDVFCTRITPSGQFDLMSPTFEKGKLLITIFVLLVITYFIRPSVSNKKLKSQWLIK |
| Fab DH4 light chain | J | 234 | Homo Sapiens , Saccharomyces Cerevisiae | LFAIPLVVPFYSHSALDVVMTQSPLSLPVTPGEPASISCRSSQTLMNRNGNNFLDWYLQKPGQSPQLLIYLGSNRAPGVPDRFSGSGSGTDFTLRISRVEPEDVGVYYCMQALQTPSFGGGTKVEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Unassigned helix | M | 24 | Homo Sapiens , Saccharomyces Cerevisiae | XXXXXXXXXXXXXXXXXXXXXXXX |
| Unassigned helix | N | 24 | Homo Sapiens , Saccharomyces Cerevisiae | XXXXXXXXXXXXXXXXXXXXXXXX |
| ER membrane protein complex subunit 2 | B | 292 | Homo Sapiens , Saccharomyces Cerevisiae | MLKDLVREKLLTIMNTKAYTQFNPEQLLQLENEMKIYMKSGDSALTEGNYFFLMEMLFYVLVYRNQDVDAQVVYNTLRDRLGENSYKMVIMKATLLQINGNDKGAIEYLENLLNDDLEYETDFVTYVSIAKKLIAIKTTSKNLSQESVLKEVVALTDKFPLDAELWWYASEIYFEMGQFEKACYCLEQVLCITPFNYACFGRLSETLYYEALRSKKQTKTELLEKALKNALRSVELSELYLKGWALVNIISRELGRNKQNDLIKLSASKLKEISAKSNNKDKITAELILNKI |
| ER membrane protein complex subunit 3 | C | 253 | Homo Sapiens , Saccharomyces Cerevisiae | MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMNMAKGNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWYFISVLGLNPVYNLIGLNDQDMGIQAGIGGPQGPQGPPQSQVDKAMHAMANDLTIIQHETCLDNVEQRVLKQYM |
| ER membrane protein complex subunit 4 | D | 190 | Homo Sapiens , Saccharomyces Cerevisiae | MSEQEPYEWAKHLLDTKYIEKYNIQNSNTLPSPPGFEGNSSKGNVTRKQQDATSQTTSLAQKNQITVLQVQKAWQIALQPAKSIPMNIFMSYMSGTSLQIIPIMTALMLLSGPIKAIFSTRSAFKPVLGNKATQSQVQTAMFMYIVFQGVLMYIGYRKLNSMGLIPNAKGDWLPWERIAHYNNGLQWFSD |
| ER membrane protein complex subunit 5 | E | 182 | Homo Sapiens , Saccharomyces Cerevisiae | MSFVSKLLYTVSALVLFHSGFSSYEFHHLLKLNSLNNAQGAISKLPKDIMYETYAGLILFVLAVFTSFEKLQYLPIESNDGKIISQGNYLKEIALNKATNVDNLIGSNPNGEIIFTPSFVDVHMKRKICREWASNTVKKEKGGSGSGENLYFQSGSGSDYKDDDDKDYKDDDDKDYKDDDDK |
| ER membrane protein complex subunit 6 | F | 108 | Homo Sapiens , Saccharomyces Cerevisiae | MSSNEEVFTQINATANVVDNKKRLLFVQDSSALVLGLVAGFLQIESVHGFIWFLILYNLINVIYIVWICQLQPGKFYQSPLHDIFFESFFREITGFVMAWTFGYALIG |
| Protein SOP4 | G | 234 | Homo Sapiens , Saccharomyces Cerevisiae | MFSQIVLLLSAFIYVASATARRGTIKGRLDLAASNITGFVSTRTSFKLYQIGNFSTEYPYTSTTMFQDDEGNFEFANLPLNDGVNETTYYVMYPASMDFNLKPNRILIEFKNLENGTLQLNAFKNFFGREYFPSKDITYPEKLQSMKVHPYITVELLHKAPIRSYLQARNVSIFSTGIVGNILNSRWKLAGVITLIALVVFPIIVEKLDPETARAIREEAKRKQREKYAAVASK |
| Endoplasmic reticulum membrane protein complex subunit 10 | H | 205 | Homo Sapiens , Saccharomyces Cerevisiae | MLVRLLRVILLASMVFCADILQLSYSDDAKDAIPLGTFEIDSTSDGNVTVTTVNIQDVEVSGEYCLNAQIEGKLDMPCFSYMKLRTPLKYDLIVDVDEDNEVKQVSLSYDETNDAITATVRYPEAGPTAPVTKLKKKTKTYADKKASKNKDGSTAQFEEDEEVKEVSWFQKNWKMLLLGLLIYNFVAGSAKKQQQGGAGADQKTE |
| Fab DH4 heavy chain | I | 254 | Homo Sapiens , Saccharomyces Cerevisiae | MAQVQLQQWGAGLLKPSETLSLTCAVYGGSFSGYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARGLAGRGYYGSGSYLRWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCAAAHHHHHHGAAEQKLISEEDLNGAA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-11-19 Deposition Author(s): Bonnar, J.L. , Boydston, E.A. , Braeuning, B. , Craik, C.S. , Frost, A. , Miller-Vedam, L.E. , Popova, K.D. , Prabu, J.R. , Schirle Oakdale, N.S. , Schulman, B.A. , Sevillano, N. , Shurtleff, M.J. , Stroud, R.M. , Weissman, J.S.