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7KN4

Crystal structure of sars-cov-2 spike protein receptor-binding domain complexed with a pre-pandemic antibody s-e6 fab

PDB DOI: 10.2210/pdb7kn4/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2020-11-04
Deposition Author(s): Liu, H. , Wilson, I.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.7 Å

7kn4
Literature

Crystal structure of sars-cov-2 spike protein receptor-binding domain complexed with a pre-pandemic antibody s-e6 fab

Liu, H. , Wilson, I.A.

Primary Citation of Related Structures: 7KN4


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFSGHHHHHH
Spike protein S1 B 231 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFSGHHHHHH
S-E6 Fab heavy chain H 223 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVTLRESGPGLVKPSETLSLTCAVSGGSLSSVNYYWSWIRQHPGKGLEWIGYIYYSGSTNYNPSLKSRVTMSLDTSKNQFSLKLSSVTAADTAVYYCATPGAIMGALHIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
S-E6 Fab heavy chain M 223 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QVTLRESGPGLVKPSETLSLTCAVSGGSLSSVNYYWSWIRQHPGKGLEWIGYIYYSGSTNYNPSLKSRVTMSLDTSKNQFSLKLSSVTAADTAVYYCATPGAIMGALHIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
S-E6 Fab light chain L 216 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QAVLTQPSSASSTPGQRVIISCSGSSSNIGSNTVSWYQQVPGAAPKLLIYFDYRRPSGVPDRFSGTRSGTSASLGISGLQSEDEADYYCAAWDDSLSAWVFGRGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
S-E6 Fab light chain N 216 Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 QAVLTQPSSASSTPGQRVIISCSGSSSNIGSNTVSWYQQVPGAAPKLLIYFDYRRPSGVPDRFSGTRSGTSASLGISGLQSEDEADYYCAAWDDSLSAWVFGRGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-11-04
Deposition Author(s): Liu, H. , Wilson, I.A.