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7KHA

Cryo-em structure of the desulfovibrio vulgaris type i-c apo cascade

PDB DOI: 10.2210/pdb7kha/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough

Deposited: 2020-10-20
Deposition Author(s): Bravo, J.P.K. , O'Brien, R. , Schwartz, E. , Taylor, D. , Wrapp, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.13 Å

7kha
Literature

Cryo-em structure of the desulfovibrio vulgaris type i-c apo cascade

Bravo, J.P.K. , O'Brien, R. , Schwartz, E. , Taylor, D. , Wrapp, D.

Primary Citation of Related Structures: 7KHA


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated protein, CT1134 family A 220 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough TYGIRLRVWGDYACFTRPEMKVERVSYDVMPPSAARGILEAIHWKPAIRWIVDRIHVLRPIVFDNVRRNEVSSKIPKPNPATAMRDRKPLYFLVDDGSNRQQRAATLLRNVDYVIEAHFELTDKAGAEDNAGKHLDIFRRRARAGQSFQQPCLGCREFPASFELLEGDVPLSCYAGEKRDLGYMLLDIDFERDMTPLFFKAVMEDGVITPPSRTSPEVRA
CRISPR-associated protein, TM1801 family B 290 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML
CRISPR-associated protein, TM1801 family C 290 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML
CRISPR-associated protein, TM1801 family D 290 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML
CRISPR-associated protein, TM1801 family E 290 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML
CRISPR-associated protein, TM1801 family F 290 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML
CRISPR-associated protein, TM1801 family G 290 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML
CRISPR-associated protein, TM1801 family H 290 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough MTAIANRYEFVLLFDVENGNPNGDPDAGNMPRIDPETGHGLVTDVCLKRKIRNHVALTKEGAERFNIYIQEKAILNETHERAYTACDLKPEPKKLPKKVEDAKRVTDWMCTNFYDIRTFGAVMTTEVNCGQVRGPVQMAFARSVEPVVPQEVSITRMAVTTKAEAEKQQGDNRTMGRKHIVPYGLYVAHGFISAPLAEKTGFSDEDLTLFWDALVNMFEHDRSAARGLMSSRKLIVFKHQNRLGNAPAHKLFDLVKVSRAEGSSGPARSFADYAVTVGQAPEGVEVKEML
CRISPR-associated protein, CT1133 family I 533 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough WENTSYILGVDAKGKQERTDKCHAAFIAHIKAYCDTADQDLAAVLQFLEHGEKDLSAFPVSEEVIGSNIVFRIEGEPGFVHERPAARQAWANCLNRREQGLCGQCLITGERQKPIAQLHPSIKGGRDGVRGAQAVASIVSFNNTAFESYGKEQSINAPVSQEAAFSYVTALNYLLNPSNRQKVTIADATVVFWAERSSPAEDIFAGMFDPPSTTAKPESSNGTPPEDSEEGSQPDTARDDPHAAARMHDLLVAIRSGKRATDIMPDMDESVRFHVLGLSPNAARLSVRFWEVDTVGHMLDKVGRHYRELEIIPQFNNEQEFPSLSTLLRQTAVLNKTENISPVLAGGLFRAMLTGGPYPQSLLPAVLGRIRAEHARPEDKSRYRLEVVTYYRAALIKAYLIRNRKLEVPVSLDPARTDRPYLLGRLFAVLEKAQEDAVPGANATIKDRYLASASANPGQVFHMLLKNASNHTAKLRKDPERKGSAIHYEIMMQEIIDNISDFPVTMSSDEQGLFMIGYYHQRKALFTKKNKEN
CRISPR-associated protein, CT1133 family K 124 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough VSLDPARTDRPYLLGRLFAVLEKAQEDAVPGANATIKDRYLASASANPGQVFHMLLKNASNHTAKLRKDPERKGSAIHYEIMMQEIIDNISDFPVTMSSDEQGLFMIGYYHQRKALFTKKNKEN
CRISPR-associated protein, CT1133 family L 124 Desulfovibrio Vulgaris (Strain Hildenborough / Atcc 29579 / Dsm 644 / Ncimb 8303) , Desulfovibrio Vulgaris Str. Hildenborough VSLDPARTDRPYLLGRLFAVLEKAQEDAVPGANATIKDRYLASASANPGQVFHMLLKNASNHTAKLRKDPERKGSAIHYEIMMQEIIDNISDFPVTMSSDEQGLFMIGYYHQRKALFTKKNKEN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (45-MER) j 45 NA UGGAUUGAAACGCCAUGCUCAGGCUGGCGAGUGCGCCACUCAUCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-10-20
Deposition Author(s): Bravo, J.P.K. , O'Brien, R. , Schwartz, E. , Taylor, D. , Wrapp, D.