7KGB
Cryoem structure of a2296-methylated mycobacterium tuberculosis ribosome bound with seq-9
PDB DOI: 10.2210/pdb7kgb/pdb
Classification: RIBOSOME/ANTIBIOTIC Organism(s): Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv)
Deposited: 2020-10-16 Deposition Author(s): Cui, Z. , Zhang, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.7 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L32 | 0 | 57 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAVPKRRKSRSNTRSRRSQWKAAKTELVGVTVAGHAHKVPRRLLKAARLGLIDFDKR |
| 30S ribosomal protein S4 | D | 201 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MARYTGPVTRKSRRLRTDLVGGDQAFEKRPYPPGQHGRARIKESEYLLQLQEKQKARFTYGVMEKQFRRYYEEAVRQPGKTGEELLKILESRLDNVIYRAGLARTRRMARQLVSHGHFNVNGVHVNVPSYRVSQYDIVDVRDKSLNTVPFQIARETAGERPIPSWLQVVGERQRVLIHQLPERAQIDVPLTEQLIVEYYSK |
| 30S ribosomal protein S5 | E | 220 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAEQPAGQAGTTDNRDARGDREGRRRDSGRGSRERDGEKSNYLERVVAINRVSKVVKGGRRFSFTALVIVGDGNGMVGVGYGKAKEVPAAIAKGVEEARKSFFRVPLIGGTITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPIEDVAPAGMLKARRKSEALAASVLPDRTI |
| 30S ribosomal protein S6 | F | 96 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MRPYEIMVILDPTLDERTVAPSLETFLNVVRKDGGKVEKVDIWGKRRLAYEIAKHAEGIYVVIDVKAAPATVSELDRQLSLNESVLRTKVMRTDKH |
| 30S ribosomal protein S7 | G | 156 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MPRKGPAPKRPLVNDPVYGSQLVTQLVNKVLLKGKKSLAERIVYGALEQARDKTGTDPVITLKRALDNVKPALEVRSRRVGGATYQVPVEVRPDRSTTLALRWLVGYSRQRREKTMIERLANEILDASNGLGASVKRREDTHKMAEANRAFAHYRW |
| 30S ribosomal protein S8 | H | 132 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MTMTDPIADFLTRLRNANSAYHDEVSLPHSKLKANIAQILKNEGYISDFRTEDARVGKSLVIQLKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPRVLGGLGVAIISTSSGLLTDRQAARQGVGGEVLAYVW |
| 30S ribosomal protein S10 | J | 101 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAGQKIRIRLKAYDHEAIDASARKIVETVVRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDIIDPTPKTVDALMRIDLPASVDVNIQ |
| 30S ribosomal protein S11 | K | 139 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRRV |
| 30S ribosomal protein S12 | L | 124 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MPTIQQLVRKGRRDKISKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSQVEVTAYIPGEGHNLQEHSMVLVRGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYGAKKEKG |
| 30S ribosomal protein S13 | M | 124 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MARLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKKKAR |
| 30S ribosomal protein S14 type Z | N | 61 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAKKALVNKAAGKPRFAVRAYTRCSKCGRPRAVYRKFGLCRICLREMAHAGELPGVQKSSW |
| 50S ribosomal protein L33 2 | 1 | 55 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MASSTDVRPKITLACEVCKHRNYITKKNRRNDPDRLELKKFCPNCGKHQAHRETR |
| 30S ribosomal protein S15 | O | 89 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MALTAEQKKEILRSYGLHETDTGSPEAQIALLTKRIADLTEHLKVHKHDHHSRRGLLLLVGRRRRLIKYISQIDVERYRSLIERLGLRR |
| 30S ribosomal protein S16 | P | 162 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAVKIKLTRLGKIRNPQYRVAVADARTRRDGRAIEVIGRYHPKEEPSLIEINSERAQYWLSVGAQPTEPVLKLLKITGDWQKFKGLPGAQGRLKVAAPKPSKLEVFNAALAAADGGPTTEATKPKKKSPAKKAAKAAEPAPQPEQPDTPALGGEQAELTAES |
| 30S ribosomal protein S17 | Q | 135 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAEAKTGAKAAPRVAKAAKAAPKKAAPNDAEAIGAANAANVKGPKHTPRTPKPRGRRKTRIGYVVSDKMQKTIVVELEDRMRHPLYGKIIRTTKKVKAHDEDSVAGIGDRVSLMETRPLSATKRWRLVEILEKAK |
| 30S ribosomal protein S18 1 | R | 84 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR |
| 30S ribosomal protein S19 | S | 93 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MPRSLKKGPFVDEHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDFIGHTFAVHDGRKHVPVFVTESMVGHKLGEFAPTRTFKGHIKDDRKSKRR |
| 30S ribosomal protein S20 | T | 86 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MANIKSQQKRNRTNERARLRNKAVKSSLRTAVRAFREAAHAGDKAKAAELLASTNRKLDKAASKGVIHKNQAANKKSALAQALNKL |
| 50S ribosomal protein L24 | U | 105 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTAISTTQRGARSGGIVTQEAPIHVSNVMVVDSDGKPTRIGYRVDEETGKRVRISKRNGKDI |
| 50S ribosomal protein L37 | V | 24 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAKRGRKKRDRKYSKANHGKRPNS |
| 50S ribosomal protein L27 | W | 86 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAHKKGASSSRNGRDSAAQRLGVKRYGGQVVKAGEILVRQRGTKFHPGVNVGRGGDDTLFAKTAGAVEFGIKRGRKTVSIVGSTTA |
| 50S ribosomal protein L28 | X | 64 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAAVCDICGKGPGFGKSVSHSHRRTSRRWDPNIQTVHAVTRPGGNKKRLNVCTSCIKAGKITRG |
| 50S ribosomal protein L34 | 2 | 47 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MTKGKRTFQPNNRRRARVHGFRLRMRTRAGRSIVSSRRRKGRRTLSA |
| 50S ribosomal protein L30 | Z | 65 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MSQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQTGGKT |
| 50S ribosomal protein L2 | C | 280 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MAIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGRGGRNAHGRITTRHKGGGHKRAYRMIDFRRNDKDGVNAKVAHIEYDPNRTARIALLHYLDGEKRYIIAPNGLSQGDVVESGANADIKPGNNLPLRNIPAGTLIHAVELRPGGGAKLARSAGSSIQLLGKEASYASLRMPSGEIRRVDVRCRATVGEVGNAEQANINWGKAGRMRWKGKRPSVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRNANKSSNKFIVRRRRTGKKHSR |
| 30S ribosomal protein S9 | I | 151 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MTETTPAPQTPAAPAGPAQSFVLERPIQTVGRRKEAVVRVRLVPGTGKFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR |
| 50S ribosomal protein L35 | 3 | 64 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MPKAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPSTRTRRLDGRTVVAANDTKRVTSLLNG |
| 50S ribosomal protein L36 | 4 | 37 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | VKVNPSVKPICDKCRLIRRHGRVMVICSDPRHKQRQG |
| 50S ribosomal protein L31 | 6 | 80 | Mycobacterium Tuberculosis (Strain Atcc 25618 / H37Rv) | MKSDIHPAYEETTVVCGCGNTFQTRSTKPGGRIVVEVCSQCHPFYTGKQKILDSGGRVARFEKRYGKRKVGADKAVSTGK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| tRNA-initiator Met(CAU) | y | 77 | NA | CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA |
| 23S rRNA | a | 3138 | NA | UUGUAAGUGUCUAAGGGCGCAUGGUGGAUGCCUUGGCAUCGAGAGCCGAUGAAGGACGUGGGAGGCUGCGAUAUGCCUCGGGGAGCUGUCAACCGAGCGUGGAUCCGAGGAUUUCCGAAUGGGGAAACCCAGCACGAGUGAUGUCGUGCUACCCGCAUCUGAAUAUAUAGGGUGCGGGAGGGAACGCGGGGAAGUGAAACAUCUCAGUACCCGUAGGAGGAGAAAACAAUUGUGAUUCCGCAAGUAGUGGCGAGCGAACGCGGAACAGGCUAAACCGCACGCAUGGGUAACCGGGUAGGGGUUGUGUGUGCGGGGUUGUGGGAGGAUAUGUCUCAGCGCUACCCGGCUGAGAGGCAGUCAGAAAGUGUCGUGGUUAGCGGAAGUGGCCUGGGAUGGUCUGCCGUAGACGGUGAGAGCCCGGUACGCGAAAACCCGGCACCUGCCUAGUAUCAAUUCCCGAGUAGCAGCGGGCCCGUGGAAUCCGCUGUGAAUCCGCCGGGACCACCCGGUAAGCCUAAAUACUCCUCGAUGACCGAUAGCGGAUUAGUACCGUGAGGGAAUGGUGAAAAGUACCCCGGGAGGGGAGUGAAAGAGUACCUGAAACCGUGUGCCUACAAUCCGUCAGAGCCUCCUUUUCCUCUCCGGAGGAGGGUGGUGAUGGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUCAGGGACAUGUCGCAAGGUUAACCCGUGUGGGGUAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGACCCACACGCGCAUACGCGCGUGUGAAUAGUGGCGUGUUCUGGACCCGAAGCGGAGUGAUCUACCCAUGGCCAGGGUGAAGCGCGGGUAAGACCGCGUGGAGGCCCGAACCCACUUAGGUUGAAGACUGAGGGGAUGAGCUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUUGCGUGGUUCACCGCGGAGGUAGAGCUACUGGAUGGCCGAUGGGCCCUACUAGGUUACUGACGUCAGCCAAACUCCGAAUGCCGUGGUGUAAAGCGUGGCAGUGAGACGGCGGGGGAUAAGCUCCGUACGUCGAAAGGGAAACAGCCCAGAUCGCCGGCUAAGGCCCCCAAGCGUGUGCUAAGUGGGAAAGGAUGUGCAGUCGCAAAGACAACCAGGAGGUUGGCUUAGAAGCAGCCACCCUUGAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUGUGCGCCGAUAAUGUAGCGGGGCUCAAGCACACCGCCGAAGCCGCGGCACAUCCACCUUGUGGUGGGUGUGGGUAGGGGAGCGUCCCUCAUUCAGCGAAGCCACCGGGUGACCGGUGGUGGAGGGUGGGGGAGUGAGAAUGCAGGCAUGAGUAGCGACAAGGCAAGUGAGAACCUUGCCCGCCGAAAGACCAAGGGUUCCUGGGCCAGGCCAGUCCGCCCAGGGUGAGUCGGGACCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGACAACGGGUUGAUAUUCCCGUACCCGUGUGUGGGCGCCCGUGACGAAUCAGCGGUACUAACCACCCAAAACCGGAUCGAUCACUCCCCUUCGGGGGUGUGGAGUUCUGGGGCUGCGUGGGAACUUCGCUGGUAGUAGUCAAGCGAAGGGGUGACGCAGGAAGGUAGCCGUACCAGUCAGUGGUAACACUGGGGCAAGCCGGUAGGGAGAGCGAUAGGCAAAUCCGUCGCUCACUAAUCCUGAGAGGUGACGCAUAGCCGGUUGAGGCGAAUUCGGUGAUCCUCUGCUGCCAAGAAAAGCCUCUAGCGAGCACACACACGGCCCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGCAUACCAAGGCGUACGAGAUAACUAUGGUUAAGGAACUCGGCAAAAUGCCCCCGUAACUUCGGGAGAAGGGGGACCGGAAUAUCGUGAACACCCUUGCGGUGGGAGCGGGAUCCGGUCGCAGAAACCAGUGAGGAGCGACUGUUUACUAAAAACACAGGUCCGUGCGAAGUCGCAAGACGAUGUAUACGGACUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGACCCGUUAACCCGCAAGGGUGAAGCGGAGAAUUUAAGCCCCAGUAAACGGCGGUGGUAACUAUAACCAUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACUUCUCAACUGUCUCAACCAUAGACUCGGCGAAAUUGCACUACGAGUAAAGAUGCUCGUUACGCGCGGCAGGACGAAAAGACCCCGGGACCUUCACUACAACUUGGUAUUGAUGUUCGGUACGGUUUGUGUAGGAUAGGUGGGAGACUGUGAAACCUCGACGCCAGUUGGGGCGGAGUCGUUGUUGAAAUACCACUCUGAUCGUAUUGGGCAUCUAACCUCGAACCCUGAAUCGGGUUUAGGGACAGUGCCUGGCGGGUAGUUUAACUGGGGCGGUUGCCUCCUAAAAUGUAACGGAGGCGCCCAAAGGUUCCCUCAACCUGGACGGCAAUCAGGUGGCGAGUGUAAAUGCACAAGGGAGCUUGACUGCGAGACUUACAAGUCAAGCAGGGACGAAAGUCGGGAUUAGUGAUCCGGCACCCCCGAGUGGAAGGGGUGUCGCUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUCCCCAAGAGUCCAUAUCGACGGGAUGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGCAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCUCUAUCCGCCGCGCGCGUCAGAAACUUGAGGAAACCUGUCCCUAGUACGAGAGGACCGGGACGGACGAACCUCUGGUGCACCAGUUGUCCCGCCAGGGGCACCGCUGGAUAGCCACGUUCGGUCAGGAUAACCGCUGAAAGCAUCUAAGCGGGAAACCUUCUCCAAGAUCAGGUUUCUCACCCACUUGGUGGGAUAAGGCCCCCCGCAGAACACGGGUUCAAUAGGUCAGACCUGGAAGCUCAGUAAUGGGUGUAGGGAACUGGUGCUAACCGGCCGAAAACUUACAACA |
| 5S rRNA | b | 115 | NA | UUACGGCGGCCACAGCGGCAGGGAAACGCCCGGUCCCAUUCCGAACCCGGAAGCUAAGCCUGCCAGCGCCGAUGAUACUGCCCCUCCGGGUGGAAAAGUAGGACACCGCCGAACA |
Experimental Data
Method: ELECTRON MICROSCOPY