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7KBF

H1.8 bound nucleosome isolated from metaphase chromosome in xenopus egg extract (oligo fraction)

PDB DOI: 10.2210/pdb7kbf/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Xenopus Laevis

Deposited: 2020-10-02
Deposition Author(s): Arimura, Y. , Funabiki, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.42 Å

7kbf
Literature

H1.8 bound nucleosome isolated from metaphase chromosome in xenopus egg extract (oligo fraction)

Arimura, Y. , Funabiki, H.

Primary Citation of Related Structures: 7KBF


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 136 Xenopus Laevis MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 136 Xenopus Laevis MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 139 Xenopus Laevis MSGRGKKVQKAASGKASRSAKAGLQFPVGRIHRLLRKGNYAVRIGSGSAIYLAATLEYLCAEVLELAGNAARDNKKLRIMPRHIQLAVRNDDELAKLFEGVTIADGGVLPNIQSALLPKKTVKGSSSSQEPTAVESQEF
Histone H2A G 139 Xenopus Laevis MSGRGKKVQKAASGKASRSAKAGLQFPVGRIHRLLRKGNYAVRIGSGSAIYLAATLEYLCAEVLELAGNAARDNKKLRIMPRHIQLAVRNDDELAKLFEGVTIADGGVLPNIQSALLPKKTVKGSSSSQEPTAVESQEF
Histone H2B 1.1 D 126 Xenopus Laevis MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 126 Xenopus Laevis MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Protein B4 K 273 Xenopus Laevis MAPKKAVAAPEGGNKENAAVKGSSKVKVKRKSIKLVKTQSHPPTLSMVVEVLKKNTERKGTSVQAIRTRILSAHPTVDPLRLKFLLRTALNKGLEKGILIRPLNSSATGATGRFKLAKPVKTTKAGKENVASENVDPNAEQETQKKAPKKEKKAKTEKEPKGEKTKAVAKKAKEDSDEKPKVAKSKKDKEAKEVDKANKEAKEVDKANKEAKEVDKAPAKKPKAKTEAAKAEGGGKAKKEPPKAKAKDVKAQKDSTDEGAPVKAGKKGKKVTN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (184-MER) i 172 NA TTGGCCAGCTAGGATATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATATCCTAGCTGGC
DNA (184-MER) j 172 NA GCCAGCTAGGATATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATATCCTAGCTGGCCAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-10-02
Deposition Author(s): Arimura, Y. , Funabiki, H.