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7KBE

Nucleosome isolated from metaphase chromosome formed in xenopus egg extract (oligo fraction)

PDB DOI: 10.2210/pdb7kbe/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Mucilaginibacter Paludis Dsm 18603

Deposited: 2020-10-02
Deposition Author(s): Arimura, Y. , Funabiki, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

7kbe
Literature

Nucleosome isolated from metaphase chromosome formed in xenopus egg extract (oligo fraction)

Arimura, Y. , Funabiki, H.

Primary Citation of Related Structures: 7KBE


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 136 Mucilaginibacter Paludis Dsm 18603 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 136 Mucilaginibacter Paludis Dsm 18603 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Mucilaginibacter Paludis Dsm 18603 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Mucilaginibacter Paludis Dsm 18603 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 139 Mucilaginibacter Paludis Dsm 18603 MSGRGKKVQKAASGKASRSAKAGLQFPVGRIHRLLRKGNYAVRIGSGSAIYLAATLEYLCAEVLELAGNAARDNKKLRIMPRHIQLAVRNDDELAKLFEGVTIADGGVLPNIQSALLPKKTVKGSSSSQEPTAVESQEF
Histone H2A G 139 Mucilaginibacter Paludis Dsm 18603 MSGRGKKVQKAASGKASRSAKAGLQFPVGRIHRLLRKGNYAVRIGSGSAIYLAATLEYLCAEVLELAGNAARDNKKLRIMPRHIQLAVRNDDELAKLFEGVTIADGGVLPNIQSALLPKKTVKGSSSSQEPTAVESQEF
Histone H2B 1.1 D 126 Mucilaginibacter Paludis Dsm 18603 MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 126 Mucilaginibacter Paludis Dsm 18603 MPEPAKSAPAPKKGSKKAVTKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (157-MER) i 156 NA GGATATCACAATCCATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATATCCTAG
DNA (157-MER) j 156 NA CTAGGATATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATAGATTGTGATATCC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-10-02
Deposition Author(s): Arimura, Y. , Funabiki, H.