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7KBB

Cryo-em structure of the hcmv pentamer bound by fabs 2-18 and 8i21

PDB DOI: 10.2210/pdb7kbb/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Salmonella Enterica , Coraliomargarita Akajimensis

Deposited: 2020-10-01
Deposition Author(s): Mclellan, J.S. , Wrapp, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.02 Å

7kbb
Literature

Cryo-em structure of the hcmv pentamer bound by fabs 2-18 and 8i21

Mclellan, J.S. , Wrapp, D.

Primary Citation of Related Structures: 7KBB


Proteins
Molecule Chains Sequence Length Organism Sequence
2-18 Fab Heavy Chain A 240 Salmonella Enterica , Coraliomargarita Akajimensis EVQLVQSGGGLVQPGGSLRVSCAASGFSFSDHDMDWVRQAPGKGFEWVGRSRNKDYSSTTEYAASVRGRFTISRHTSEDLLYLELNTVKTEDTAVYFCARGPHHSDRSGYYGGTFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
2-18 Fab Light Chain B 214 Salmonella Enterica , Coraliomargarita Akajimensis DIQMTQSPSSVSASVGDRVIITCRASQGISSWLAWYQQKPGRAPRLLIYDASTLESGVPSRFSGRGSGTEFTLTINSLQPEDFATYYCQQGNMFPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Envelope protein UL128 C 144 Salmonella Enterica , Coraliomargarita Akajimensis EECCEFINVNHPPERCYDFKMCNRFTVALRCPDGEVCYSPEKTAEIRGIVTTMTHSLTRQVVHNKLTSCNYNPLYLEADGRIRCGKVNDKAQYLLGAAGSVPYRWINLEYDKITRIVGLDQYLESVKKHKRLDVCRAKMGYMLQ
Envelope glycoprotein UL130 D 189 Salmonella Enterica , Coraliomargarita Akajimensis SPWSTLTANQNPSPPWSKLTYSKPHDAATFYCPFLYPSPPRSPLQFSGFQQVSTGPECRNETLYLLYNREGQTLVERSSTWVKKVIWYLSGRNQTILQRMPQTASKPSDGNVQISVEDAKIFGAHMVPKQTKLLRFVVNDGTRYQMCVMKLESWAHVFRDYSVSFQVRLTFTEANNQTYTFCTHPNLIV
UL131A E 111 Salmonella Enterica , Coraliomargarita Akajimensis QCQRETAEKNDYYRVPHYWDACSRALPDQTRYKYVEQLVDLTLNYHYDASHGLDNFDVLKRINVTEVSLLISDFRRQNRRGGTNKRTTFNAAGSLAPHARSLEFSVRLFAN
8I21 Fab Heavy Chain H 234 Salmonella Enterica , Coraliomargarita Akajimensis LVELVESGGGVVQPGRSLRLSCAASGFTFSSDGMHWVRQSPGRGLEWVAFISSDGSTPYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAMYFCAKDWALFRWLRTFDHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
8I21 Fab Light Chain L 215 Salmonella Enterica , Coraliomargarita Akajimensis ETVMTQSPATLSVSPGGRATLSCRASQSVGINLAWYQQKPGQAPRLLIYGASTRASGFPARFSGSGSGTEFTLTITSLQSEDFAVYYCQQYNDWPPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-10-01
Deposition Author(s): Mclellan, J.S. , Wrapp, D.