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7KAL

Cryo-em structure of the sec complex from t. lanuginosus, wild-type, class with sec62, plug-open conformation

PDB DOI: 10.2210/pdb7kal/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Thermomyces Lanuginosus

Deposited: 2020-10-01
Deposition Author(s): Itskanov, S. , Park, E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.0 Å

7kal
Literature

Cryo-em structure of the sec complex from t. lanuginosus, wild-type, class with sec62, plug-open conformation

Itskanov, S. , Park, E.

Primary Citation of Related Structures: 7KAL


Proteins
Molecule Chains Sequence Length Organism Sequence
Protein transport channel Sec61 complex, alpha subunit (Sec61) A 480 Thermomyces Lanuginosus MSGLRFLDLIKPFTPLLPEVAAPETKVPFNQKLMWTGLTLLIFLVMSQMPLYGIVSSDTSDPLYWLRMMLASNRGTLMELGITPIISSGMVFQLLAGTHLIDVNLDLKTDRELYQTAQKLFAIILSFGQACVHVLTGLYGQPSDLGAGICVLLIVQLVVAGLVVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGPEFEGAIIALFHLLLTWPDKQRALREAFYRQSLPNIMNLLATLLVFAAVIYLQGFRVEIPVKSARQRGVRGSYPVRLFYTSNMPIMLQSALCSNVFLISQMLYSRFSDNLLVRLLGVWEPREGSAQLHAASGIAYYMSPPLNFKEALLDPVHTVVYITFMLVACALFSKTWIEVSGSSPRDVAKQLKDQGLVMAGHREQSMYKELKRVIPTAAAFGGACIGALSVASDLLGALGSGTGILLAVTIIYGYFEMAAREGDFGQGLRGLVPGNGS
Protein transport channel Sec61 complex, gamma subunit (Sss1) C 70 Thermomyces Lanuginosus MSEQVQELLDIPRDFLKDGMQFIHKCQKPDRKEFKKVCQAVAIGFVAMGAIGYIVKLVHIPINNILVAGS
Protein transport channel Sec61 complex, beta subunit (Sbh1) B 125 Thermomyces Lanuginosus MASSGAESGSESKSPNPGAGSGPGSASGSSAGVIRPSSPTPPGGPRAAIRRRAAADHKESLRNARPSSTRAAGAGGSSGTMLKLYTDESPGLRVDPVVVLVLSLCFIFSVVGLHVIAKITRKFSS
Protein transport protein Sec63 D 719 Thermomyces Lanuginosus GGSGGSGGSGGSGGSMSSREYNYDENGQFFPFFVLTLTGLVTLPLTYSLLKPPKKVESTAPRIKSDFKPQHDDIIQNQKRKRLRKERRVKRAIAVVVGWAIIGYMVYLIIVTRRTAPKIWDPYEILGISRSADERAIARRYKRLSLLYHPDKVRPDPSKNETMEMLNQRFVELTKAYKALTDEEIRNNYLQYGHPDGKQSYSIGIALPKLIIEEGSGKYVLMLYASLLGILLPYIVGRWWYGSQRYTREKVLAASAGNMFREYEGTMIGGPIVNALSTGEEYKEMLSGPKAEEGLAKVEKKVLALDEKILSAKDREVLRKIDNPVRRKALALLWAYLNRIDLEDPVLNEEKYEAGSIALSLTESFTAIALAFGNLIPIIGAYRISQCIVQAISPGSSPLLQLPYFTPKVVESVEGADVKTHLSVQKYLDMPEERRRSLTVGPGLLTEDQYNSAIAVAKQLPLFAISKAFFKVAGERVVTPSSLVQLVIKGRIIPPGSTGVPDVTEKDLEDIDPDEADVNAIIGRKGATKPSGKSGDENDGDRVQPPLAHAPYLPRDHPPRWHIFLADAKQGKIAVPPFTFTTFDKPIFDEQGKPTFNMQTLRMQFQAPPQVGNFSFVLHMISDSYMGFDVKQEITLQVEDPSKAAVLQEEDDISEPDEDSIAGQMQALKTGVPPKKKKVVESDDDESDTEGDEEDTSETDTETDTDEEGSGTGENLYFQ
Protein transport protein Sec66/Sec71 E 243 Thermomyces Lanuginosus MDWLTLVVPFAYLGVLIGCLATFSSLYRRRKAAKAASLEPWFPPHLQRDIYHSLLHLDQQQQNEKKTRVPETVLKAALLRRAAEDIKRVMAIREQKQALALLLQRGSVGDELWQRFLRAEKEMEDEVRDVVAEANSYAPNWGQVIFQSAREMDANATYRARMEEYQATVAEERAWWDKKRASIQEGFMKELDAEKERPATAASTATNTTSTTSDDDAVLVEAEKEGTSSPAPGKKKKKGKKGS
Protein transport protein Sec72 F 214 Thermomyces Lanuginosus MSSDLDTYTHYPLHLDPSSKAVSLATTEGQTPAQTEAVEAELQQLNALHRSLISLDPPNVPPPPLPINPKRSAQITKLKETANTAYKRGNHGEAVRLYSYAIEMAAGRPGWEPVNLAREELSGLYANRAQAHMAQQMWPEGWVDAKCSVESKPVGNAKGWWRGGKCLVEMGRYDEARAWIEQALGIEGPASDGGKELAALLEEIKAGSQRRQGS
Protein transport protein Sec62 G 402 Thermomyces Lanuginosus MAAPPPGMTPQQFAALQQHMQQQIAAEAAKRGMTVEEFSKMQREQLNAEAAKAGMTPEQYINQLRMRALQQRAAMQQQMQQQQQQGGQGQTQGQGQGQGQQGQGQPQVQHVQHVQQQVSVNPNAPPNPKAIALAKWLRSQNLKARTCILDGQRREMFKVKRALRALESPEYQKAAAKNKLLPPVTDRASAENAFKLLPLSFLALRVSKVSSNYNKGKRVKGLWTVKVEQHQDTDPMTHYVWLYEGPQWKQKALAAAFVIGIFAIVLFPLWPIMLRQGVWYLSVGMLGLLGLFFALAIVRLILFCVTVFVVPPGIWLFPNLFEDVGFIDSFKPLWAWNEKKKKPKKAKAAVSKSQEKGAAPTTAAPEAPTATTTSSEAQPSSSSGTASKRNLAASVEDAEEGS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-10-01
Deposition Author(s): Itskanov, S. , Park, E.