PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7JQC

Sars-cov-2 nsp1, crpv ires and rabbit 40s ribosome complex

PDB DOI: 10.2210/pdb7jqc/pdb

Classification: RIBOSOME/VIRAL PROTEIN
Organism(s): Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2020-08-10
Deposition Author(s): Xiong, Y. , Yuan, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

7jqc
Literature

Sars-cov-2 nsp1, crpv ires and rabbit 40s ribosome complex

Xiong, Y. , Yuan, S.

Primary Citation of Related Structures: 7JQC


Proteins
Molecule Chains Sequence Length Organism Sequence
eS25 A 125 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA
eS31 G 156 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
RACK1 H 317 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR
eS8 J 208 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK
uS4 K 194 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED
S10_plectin domain-containing protein L 165 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRGEADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
eS12 N 132 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MAEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK
uS19 Q 145 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MAEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLSRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK
Uncharacterized protein R 146 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR
eS17 S 135 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV
uS13 T 152 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK
Uncharacterized protein U 145 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH
uS10 V 119 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA
40S ribosomal protein S21 W 83 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF
40S ribosomal protein S24 Z 130 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MNDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKK
eS30 F 133 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MQLFVRAQELHTLEVTGRETVAQIKAHVASLEGIAPEDQVVLLAGTPLEDEATLGQCGVEALSTLEVAGRMLGGKVHGSLARVGKVRGQTLKVAKQEKKKKRTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS
40S ribosomal protein S4 M 263 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MARGPKKHLKRVAAPKHWMLDKLTSVFAPRPSTGPHKLRECLPLIIFLRNKLKYALTGDEVKKICMQRFIKIDGKVRADITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG
40S ribosomal protein S26 B 115 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM
uS17 O 158 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
uS15 P 151 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA
Uncharacterized protein X 168 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MKARALSGSGVRRRRAAMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
uS8 Y 130 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF
eS1 C 264 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV
Ribosomal protein S3 E 243 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPVPTA
eS28 D 69 Cricket Paralysis Virus , Oryctolagus Cuniculus , Severe Acute Respiratory Syndrome Coronavirus 2 MDTSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLTLLESEREARRLR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Cricket paralysis virus IRES RNA i 192 NA AAAAAUGUGAUCUUGCUUGUAAAUACAAUUUUGAGAGGUUAAUAAAUUACAAGUAGUGCUAUUUUUGUAUUUAGGUUAGCUAUUUAGCUUUACGUUCCAGGAUGCCUAGUGGCAGCCCCACAAUAUCCAGGAAGCCCUCUCUGCGGCUUUUCAGAUUAGGUAGUCGAAAAACCUAAGAAAUUUACCUGCUAC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-08-10
Deposition Author(s): Xiong, Y. , Yuan, S.