PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7JIL

70s ribosome flavobacterium johnsoniae

PDB DOI: 10.2210/pdb7jil/pdb

Classification: RIBOSOME
Organism(s): Flavobacterium Johnsoniae , Flavobacterium Sp. Root186

Deposited: 2020-07-23
Deposition Author(s): Ortega, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

7jil
Literature

70s ribosome flavobacterium johnsoniae

Ortega, J.

Primary Citation of Related Structures: 7JIL


Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein L32 B 64 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MAHPKRKTSKTRRDKRRTHYKATVAQIATCPITGEAHLYHRAYWHEGKMYYRGQVVIDKSEAVA
30S ribosomal protein S8 M 132 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MYTDPIADYLTRVRNAVAANHKVVEIPASNLKKEITKILFDQGYILSYKFEQNTVQGSIKIALKYDKDTKEPVIKDIQRISKPGLRKYAGAAKLPRILNGLGIAIVSTSKGLMTGKQAKQLNVGGEVICYVY
30S ribosomal protein S9 N 128 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MGVIHKIGRRKTAVARVYVSEGTGNITVNKKEFATYFPTATLQYKVLQPLSMTENVNNFDVKVNVYGGGTTGQAEAVRMALARVMCEVNAENRGILKPEGLLTRDPRMVERKKFGQKKARKRFQFSKR
30S ribosomal protein S10 O 101 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MSQKIRIKLKSYDHMLVDKSAEKIVKTVKTTGAVVTGPIPLPTHKKLFTVLRSPHVNKKAREQFEVMSYKRLIDIYSSSSKTIDALMKLELPSGVEVEIKV
30S ribosomal protein S11 P 127 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MAKATAKKRKVIVESTGEAHISSTFNNIIISLTNKKGEVIAWSSAGKMGFRGSKKNTPYAAQMAAEDCSKVALEAGLKKVKVYVKGPGNGRESAIRSIHNGGIEVTEIIDVTPMPHNGCRPPKRRRV
30S ribosomal protein S12 Q 127 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MPTIQQLVRTGRTQITKKSKSVALDSCPQRRGVCTRVYTTTPKKPNSAMRKVARVRLTNGNEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGALDTSGVAGRTQRRSKYGAKRPKEAKK
30S ribosomal protein S13 R 124 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKTVANKKKATK
30S ribosomal protein S14 S 89 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MAKESMKAREVKREKTVAKYAEKRKALLEAGDYEGLQRLPKNASPVRLHNRCKLTGRPRGYIRQFGISRVTFREMANNGLIPGVKKASW
30S ribosomal protein S15 T 88 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MYLTKEKKEEIFAQHGDAKNTGKAEGQIALFTYRISHLTEHLKKNRHDYNTERSLVLLVGKRRALLDYLKRKDINRYREIIKVLNIRK
30S ribosomal protein S16 U 188 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MSVKIRLQRHGKKGKPFYWVVAADARSKRDGKYLEKIGTYNPNTNPATVELNLDSIVKWLHQGAQPTDTARAILSYKGALLKHHLDGGVRKGALTQEQADAKLTAWLEAKAGKVDAKKDGLSKAQADAKAKALKAEKEVNDKRIAAAAKAEADAIAAASATEEAATEEVAEAAEEAPAAEENNETTEA
30S ribosomal protein S17 V 86 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MEEKRNLRKERIGVVTSNKMDKSIVISEVRKVKHPLYGKFVLKTKKYVAHDETNDCNIGDTVRISETRPLSKTKCWRLVEILERAK
50S ribosomal protein L33 C 60 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MAKKGNRIQVILECTEHKTSGVPGTSRYITTKNKKNTPDRLEIKKFNPILKRVTVHKEIK
30S ribosomal protein S18 W 98 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MSTIEQSAKGKKDGDIRYLTPLNIETNKTKKYCRFKKSGIKYIDYKDADFLLKFVNEQGKILPRRLTGTSLKYQRKVSVAVKRARHLALMPYVADLLK
30S ribosomal protein S19 X 92 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MARSLKKGPFVHYKLDKKVQENVESGKNSVVKTWSRASMITPDFVGQTIAVHNGRQFVPVYVTENMVGHKLGEFSPTRSFRGHAGAKNKGKK
30S ribosomal protein S20 Y 83 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MANHKSALKRIRSNEKRRVLNRYQHKTTRNAIKALRLATDKSDAAAKLSTVISMIDKLAKKNIIHDNKASNLKSKLTKHVAKL
30S ribosomal protein S21 Z 64 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MLIIPIKDGENIDRALKRYKRKFDKTGTVRQLRARTAFIKPSVVKRAQIQKAAYIQTLKDSLES
50S ribosomal protein L38 4 50 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MAKKTVASLQTSSKRLSKAIKMVKSPKTGAYIFVESIMAPELVDEFLKKK
30S ribosomal protein S22 5 30 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MPSGKKRKRHKVATHKRKKRARANRHKKKK
50S ribosomal protein L31 A 84 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MKKGIHPENYRLVAFKDMSNDDVFITKSTADTKETIEVDGVEYPVVKMEISRTSHPFYTGKSKLIDTAGRIDKFKTKYAKHAKK
50S ribosomal protein L34 D 53 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MSKRTFQPSKRKRRNKHGFMDRMASANGRKVLARRRAKGRHKLTVSSEPRHKK
50S ribosomal protein L5 E 183 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MAYTPRLKEEYKSRVISALKEEFGYTNVMQVPKLEKIVLSRGVGAAVSDKKLIDYAVDELTKITGQKAVITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGMDITFVTTAKTDKEAKSLLAELGLPFKKN
50S ribosomal protein L6 F 180 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MSRIGKSPIVIPAGVTVEVKDGIITVKGKKGQLVQEFSDVNVTVEGDQVLVERSSDHKDHRAKHGLFRSLISNMVVGVSEGFTKELELVGVGYRAANQGNKLDLALGYSHNIVLEIAPEVSLETISEAGANPIVKLTSFDKQLLGQVAAKIRGFRKPEPYKGKGVKFVGEVLRRKAGKSA
30S ribosomal protein S3 H 252 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MGQKTNPIGNRLGIIRGWDSNWYGGNDYGDKLAEDHKIRKYIHARLSKASVSKVIIERTLKLVTVTITTARPGIIIGKGGQEVDKLKEELKKVTDKEVQINIFEIKRPELDAYLVATSIARQIESRISYRRAIKMAIAASMRMNAEGIKVLISGRLNGAEMARSEGFKEGRIPLSTFRADIDYALAEAHTTYGRMGIKVWIMKGEVYGKRDLSPLAGMDKKQSGTGGGKGGDAPRGKSNFNKGGKPDARKRK
30S ribosomal protein S4 I 201 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MARYTGPKTKIARKFGEAIFGDDKSFEKRNYPPGQHGMAKKRGKKSEYAVQLMEKQKAKYSYGILEKQFRNLFEKASATKGVTGEVLLQLCEARLDNVVFRMGIAPSRRGARQIVSHRHITVNGEVVNIPSYHLKPGDKVAVREKSKSLEAIERSLSNSSHVYEWITWNNDLKEGTFVSVPARLQIPENIKEQLIVELYNK
50S ribosomal protein L13 J 151 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MDALSYKTISASKATVTKEWIVVDAEGHNLGRLASKVAMILRGKYKPSYTPHVDCGDNVIVINSEKINLTGTKLNDKIYMRHTGYPGGQRTLTAKVLQSKNPALLVEKAVKGMLPKNKLGAELFRNLNVVVGSEHTHGAQKPRTVNLNDLK
50S ribosomal protein L14 K 122 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MVQQESRLKVADNTGAKEVLTIRVLGGTKRRYASVGDKIVVSIKDATPNGNVKKGAVSTAVVVRTKKEVRRADGSYIRFDDNACVLLNAAGEMRGTRVFGPVARELREKQFMKIVSLAPEVL
50S ribosomal protein L15 L 150 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MNLSNLQPAEGSTHNQNKRVGRGEGSGKGGTAARGHKGAKSRSGYSKKIGFEGGQMPLQRRVPKFGFKNINRKEYEGVNLDTLQLLVDNGVITDSVSMTDFVANRLASKNEIVKILGRGELKAKLKVTAHKFTATAKAAIEAAGGEAVTI
50S ribosomal protein L9 G 146 Flavobacterium Johnsoniae , Flavobacterium Sp. Root186 MEIILKQDVQNLGFKDDVVSVKPGYGRNFLIPQGFATLATPSAKKVLAENLKQRAHKEAKIVADAKALAETLKALEIKLTAKAGGEKLFGSITNIDIAEALEKSGNAIDRKFITSGVVKRIGKYNATVRLHRDVIVELPYEIVAEK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (2862-MER) 1 2862 NA AAAUAAGGGCGUAUGGGGAAUGCCUAGGCUCUCAGAGGCGAUGAAGGACGUGAUAAGCUGCGAAAAGCUGCGGGGACUGGCACACACAGAUUGAUCCGCAGAUAUCCGAAUGGGGCAACCCGCUAUAUUGAAGAUAUAGCACACCGAUAGGUGGGCAAACCCGCUGAACUGAAACAUCUAAGUAGGCGGAGGAGAAGAAAACAAAAGUGAUUCCGUAAGUAGUGGCGAGCGAACGCGGAUUAGCCCAAACCAGUGCUGUUACGGCAGUGCUGGGGUUGUAGGACCACGACAUUUUAUGCAUGCAGAACCGGAAGUUACUGGAAAGUGACGCCAAAGAGGGUGAUAGCCCCGUAUGGGUAAUAAAUGUAAUAGAUAGUGGUAUCCUGAGUAGGGCGGGACACGUGAAACCCUGUCUGAAUUCGGCGGGACCAUCCGCUAAGGCUAAAUACUCCUGAGAGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGAACCGUGAAUAACGGAGUGAAAUAGAUCCUGAAACCAUACGCUUACAAGCGGUCGGAGCCCUUUCGUGGGGUGACGGCGUGCCUUUUGCAUAAUGAGCCUACGAGUUAACGCUGCUGGCAAGGAUAAGUACUUCAGGUACGGAUCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCUUUAGUCAGUAGUGUUAGACGCGAAACCGUGUGAUCUACCCAUGGGCAGGUUGAAGCUGUGGUAACACACAGUGGAGGACCGAACCGGUUGACGUUGAAAAGUCUUCGGAUGACCUGUGGGUAGGGGUGAAAGGCCAAUCAAACUCGGAAAUAGCUCGUACUCCCCGAAAUGCAUUUAGGUGCAGCGUUAGUUAUAAAGUUAUACAGAGGUAGAGCUACUGAUUGGAUGCGGGGGCUUCACCGCCCACCAAUUCCUGACAAACUCCGAAUGCUGUAUAAUGUUCACUAACAGUGAGGGCUUGGGUGCUAAGGUCCAAGUCCGAGAGGGAAAGAACCCAGACCAUCAGCUAAGGUCCCCAAAUAUAUGCUAAGUUGAAAGAACGAGGUUUGUCUGCCCAGACAGCUAGGAUGUUGGCUUGGAAGCAGCCAUUCAUUUAAAGAGUGCGUAACAGCUCACUAGUCGAGCGGACGAGCAUGGAUAAUAAUCGGGCAUAAGCAUAUUACCGAAGCUAUGGAUUUGCAAGUAAUUGCAAGUGGUAGGGGAGCAUUCUAACAGGGUUGAAGGUUUUUCGUAAGGAGGGCUGGACUGGUUAGAAAAGAAAAUGUAGGCAUAAGUAACGAUAAUGCGGGCGAGAAACCCGCACACCGAAAAACUAAGGUUUCCACAGCUAUGCUAAUCAGCUGUGGGUUAGUCUGGUCCUAAGGCGAACCCGAAAGGGACAGUCGAUGGCUAACGGGUUAAUAUUCCCGUACUACUAAUUACUGUGAUGGGGUGACGGAGUGAUGAAAGCGCCGCGAACUGACGGAAUAGUUCGUUGAAGUACCUAGCUAUAGGUCCUGUAGUAAAAUGCGCAGGAACUGGUGAAAUACGAUAGUACUCGGAGUCUUCGGACAAAGAGAUAGUGCGCCUAAGGGCUUCCAAGAAAAACCUCUAAACUUCAGGUAAUUAGUACCAGUACCGUAAACCGACACAGGUAGUUGAGGAGAGAAUCCUAAGGUGCUCGAGAUAUUCAUGGCUAAGGAAUUAGGCAAAAUAGACCUGUAACUUCGGGAGAAAGGUCGCCCUGAGCAAUCAGGGCCGCAGUGAAGAGGUCCAGGCGACUGUUUAUCAAAAACACAGGGCUCUGCAAAAUCGUAAGAUGAAGUAUAGGGCCUGACACCUGCCCGGUGCUGGAAGGUUAAGAGGAGAUGUUAUCUUCGGAGAAGCAUUGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGUGUAACGAUCUGGACACUGUCUCAGCCAUGAGCUCGGUGAAAUUGUAGUAACGGUGAAGAUGCCGUUUACCCGCAGUGGGACGAAAAGACCCUGUGCACCUUUACUAUAGCUUAGUACUGACCUUGGAUAAAUGAUGUGUAGGAUAGGUUGGAGACUAUGAAGCGGCGUCGCCAGGCGUUGUGGAGUCAUUGUUGAAAUACAACCCUUUGUUUAUCUGAGGCCUAACCUCGCUAUGCGGGGGACAGUGCUUGGUGGGUAGUUUGACUGGGGUGGUCGCCUCCAAAAGAGUAACGGAGGCUUCUAAAGGUUCCCUCAGUACGCUUGGUAACCGUGCGUAGAGUGCAAUGGCAUAAGGGAGCUUGACUGAGAGACAUACAGGUCGAUCAGGUACGAAAGUAGAGCAUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAAAGGAUAAAAGGUACGCCGGGGAUAACAGGCUGAUCUCCCCCAAGAGUUCAUAUCGACGGGGGGGUUUGGCACCUCGAUGUCGGCUCGUCACAUCCUGGGGCUGGAGAAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGUGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCUCUAUCUACUGCGGGCGUUAGAAAUUUGAGUGGAUCUGAUUCUAGUACGAGAGGACCGAAUUGGACUAACCUCUAGUGUAUCUGUUGUCCCGCCAGGGGCACCGCAGAGUAGCUACGUUGGGAAGGGAUAAGCGCUGAAAGCAUAUAAGCGCGAAACCCACCACAAGAUGAGAUUUCUUUUAAGGAUCGUGGAAGAUGACCACGUUGAUAGGCUAUAGAUGUAAAGGCAGUAAUGUCAUAGUCGAGUAGUACUAAUAAUCCG
RNA (1519-MER) 2 1520 NA UAUACGAUGAAGAGUUUGAUCCUGGCUCAGGAUGAACGCUAGCGGCAGGCUUAACACAUGCAAGUCGAGGGGUAGAAGUCUUCGGGCUUUGAGACCGGCGCACGGGUGCGUAACGCGUAUGCAAUCUGCCUUUCACAGAGGGAUAGCCCAGAGAAAUUUGGAUUAAUACCUCAUAGUAUUAUAGAGCGGCAUCACUUUAUAAUUAAAGUCACAACGGUGAAAGAUGAGCAUGCGUCCCAUUAGCUAGUUGGUAAGGUAACGGCUUACCAAGGCCACGAUGGGUAGGGGUCCUGAGAGGGAGAUCCCCCACACUGGUACUGAGACACGGACCAGACUCCUACGGGAGGCAGCAGUGAGGAAUAUUGGUCAAUGGACGCAAGUCUGAACCAGCCAUGCCGCGUGCAGGAUGACGGUCCUAUGGAUUGUAAACUGCUUUUGUACGAGAAGAAACACUCCUAUAUAUAGGAGCUUGACGGUAUCGUAAGAAUAAGGAUCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGAUCCAAGCGUUAUCCGGAAUCACUGGGUUUAAAGGGUCCGUAGGCGGUUUAGUAAGUCAGUGGUGAAAGCCCAUCGCUCAACGGUGGAACGGCCAUUGAUACUGCUGAACUUGAAUUACUGGGAAGUAACUAGAAUAUGUAGUGUAGCGGUGAAAUGCUUAGAUAUUACAUGGAAUACCAAUUGCGAAGGCAGGUUACUACCAGUUUAUUGACGCUGAUGGACGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGGAUACUAGCUGUUGGGCGCAAGUUCAGUGGCUAAGCGAAAGUGAUAAGUAUCCCACCUGGGGAGUACGAACGCAAGUUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAACAUGUGGUUUAAUUCGAUGAUACGCGAGGAACCUUACCAAGGCUUAAAUGCAGACUGACCGAUUUGGAAACAGAUCUUAUCGCAAGACAGUUUACAAGGUGCUGCAUGGUUGUCGUCAGCUCGUGCCGUGAGGUGUCAGGUUAAGUCCUAUAACGAGCGCAACCCCUGUUGUUAGUUGCCAGCGAGUGAUGUCGGGAACUCUAACAAGACUGCCAGUGCAAACUGUGAGGAAGGUGGGGAUGACGUCAAAUCAUCACGGCCCUUACGCCUUGGGCUACACACGUGCUACAAUGGCCGGUACAGAGAGCAGCCACUGGGUGACCAGGAGCGAAUCUAUAAAGCCGGUCACAGUUCGGAUCGGAGUCUGCAACUCGACUCCGUGAAGCUGGAAUCGCUAGUAAUCGGAUAUCAGCCAUGAUCCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCAAGCCAUGGAAGCUGGGGGUGCCUGAAGUCGGUGACCGCAAGGAGCUGCCUAGGGUAAAACUGGUAACUAGGGCUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAACACCUCCUUUCU
RNA (111-MER) 3 111 NA UUAAGGUGGUUAUUGCGGCGGGGCUCACCUCUUCCCAUCCCGAACAGAGAAGUUAAGCCCGCUUGCGCAGAUGGUACUGCAGUUUUGUGGGAGAGUAUGUCGUCGCCUUUC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-07-23
Deposition Author(s): Ortega, J.