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FASTA Sequence PDB Format mmCIF Format
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7JHH

Cryo-em structure of atp-bound fully inactive ampk in complex with fab and nanobody

PDB DOI: 10.2210/pdb7jhh/pdb

Classification: TRANSFERASE/IMMUNE SYSTEM
Organism(s): Escherichia Coli K-12 , Homo Sapiens , Synthetic Construct

Deposited: 2020-07-20
Deposition Author(s): Kossiakoff, A.A. , Melcher, K. , Murkherjee, S. , Xu, H.E. , Xu, T.H. , Yan, Y. , Zhou, X.E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.92 Å

7jhh
Literature

Cryo-em structure of atp-bound fully inactive ampk in complex with fab and nanobody

Kossiakoff, A.A. , Melcher, K. , Murkherjee, S. , Xu, H.E. , Xu, T.H. , Yan, Y. , Zhou, X.E.

Primary Citation of Related Structures: 7JHH


Proteins
Molecule Chains Sequence Length Organism Sequence
5'-AMP-activated protein kinase catalytic subunit alpha-1 A 484 Escherichia Coli K-12 , Homo Sapiens , Synthetic Construct VKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSSTMIDDEALKEVCEKFECSEEEVLSCLYNRNHQDPLAVAYHLIIDNRRIMNEAKDFYLATSPPDSFLDDHHLTRPHPERVPFLVAETPRARHTLDELNPQKSKHQGVRKAKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTYSKMSLQLYQVDSRTYLLDFRSIDDELTPRPGSHTIEFFEMCANLIKILAQ
5'-AMP-activated protein kinase subunit beta-2 B 198 Escherichia Coli K-12 , Homo Sapiens , Synthetic Construct MARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYAFRSAARFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
5'-AMP-activated protein kinase subunit gamma-1 G 306 Escherichia Coli K-12 , Homo Sapiens , Synthetic Construct MGSNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALVLTGG
Maltodextrin-binding protein M 373 Escherichia Coli K-12 , Homo Sapiens , Synthetic Construct MAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNAAEF
Fab light chain L 215 Escherichia Coli K-12 , Homo Sapiens , Synthetic Construct SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSSGPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Fab heavy chain H 237 Escherichia Coli K-12 , Homo Sapiens , Synthetic Construct EISEVQLVESGGGLVQPGGSLRLSCAASGFNIYYYSIHWVRQAPGKGLEWVASIYPYSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARYYPYFISYYSKMEAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
Nanobody N 159 Escherichia Coli K-12 , Homo Sapiens , Synthetic Construct MKYLLPTAAAGLLLLAAQPAMAMHHHHHHGENLYFQGSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-07-20
Deposition Author(s): Kossiakoff, A.A. , Melcher, K. , Murkherjee, S. , Xu, H.E. , Xu, T.H. , Yan, Y. , Zhou, X.E.