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FASTA Sequence PDB Format mmCIF Format
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7JHG

Cryo-em structure of atp-bound fully inactive ampk in complex with dorsomorphin (compound c) and fab-nanobody

PDB DOI: 10.2210/pdb7jhg/pdb

Classification: TRANSFERASE/IMMUNE SYSTEM
Organism(s): Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica , Fremyella Diplosiphon

Deposited: 2020-07-20
Deposition Author(s): Kossiakoff, A.A. , Melcher, K. , Murkherjee, S. , Xu, H.E. , Xu, T.H. , Yan, Y. , Zhou, X.E.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.47 Å

Literature

Cryo-em structure of atp-bound fully inactive ampk in complex with dorsomorphin (compound c) and fab-nanobody

Kossiakoff, A.A. , Melcher, K. , Murkherjee, S. , Xu, H.E. , Xu, T.H. , Yan, Y. , Zhou, X.E.

Primary Citation of Related Structures: 7JHG


Proteins
Molecule Chains Sequence Length Organism Sequence
5'-AMP-activated protein kinase catalytic subunit alpha-1 A 484 Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica , Fremyella Diplosiphon VKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSSTMIDDEALKEVCEKFECSEEEVLSCLYNRNHQDPLAVAYHLIIDNRRIMNEAKDFYLATSPPDSFLDDHHLTRPHPERVPFLVAETPRARHTLDELNPQKSKHQGVRKAKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTYSKMSLQLYQVDSRTYLLDFRSIDDELTPRPGSHTIEFFEMCANLIKILAQ
5'-AMP-activated protein kinase subunit beta-2 B 198 Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica , Fremyella Diplosiphon MARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYAFRSAARFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI
5'-AMP-activated protein kinase subunit gamma-1 G 306 Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica , Fremyella Diplosiphon MGSNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALVLTGG
Maltodextrin-binding protein M 373 Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica , Fremyella Diplosiphon MAKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTNAAEF
Fab light chain L 215 Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica , Fremyella Diplosiphon SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSSSGPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Fab heavy chain H 237 Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica , Fremyella Diplosiphon EISEVQLVESGGGLVQPGGSLRLSCAASGFNIYYYSIHWVRQAPGKGLEWVASIYPYSGSTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARYYPYFISYYSKMEAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
Nanobody N 159 Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) , Salmonella Enterica , Fremyella Diplosiphon MKYLLPTAAAGLLLLAAQPAMAMHHHHHHGENLYFQGSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-07-20
Deposition Author(s): Kossiakoff, A.A. , Melcher, K. , Murkherjee, S. , Xu, H.E. , Xu, T.H. , Yan, Y. , Zhou, X.E.