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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7G5E

Crystal structure of rat autotaxin in complex with rac-(4s,6r,7s,8s,11s,12s,15r,16r)-4,6-dihydroxy-12,16-dimethyl-15-[rac-(2r)-6-methyl-5-methylidene-4-oxoheptan-2-yl]pentacyclo[9.7.0.01,3.03,8.012,16]octadecane-7-carboxylic acid, i.e. smiles [c@@]123[c@@]4(c1)[c@h]([c@]1([c@](cc4)([c@h](cc1)[c@@h](cc(=o)c(=c)c(c)c)c)c)c)cc[c@h]2[c@@h]([c@@h](c[c@@h]3o)o)c(=o)o with ic50=0.0603796 microm

PDB DOI: 10.2210/pdb7g5e/pdb

Classification: HYDROLASE
Organism(s): Rattus Norvegicus

Deposited: 2023-06-05
Deposition Author(s): Benz, J. , Boehringer, M. , Hunziker, D. , Rudolph, M.G. , Stihle, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.96 Å

Literature

Crystal structure of rat autotaxin in complex with rac-(4s,6r,7s,8s,11s,12s,15r,16r)-4,6-dihydroxy-12,16-dimethyl-15-[rac-(2r)-6-methyl-5-methylidene-4-oxoheptan-2-yl]pentacyclo[9.7.0.01,3.03,8.012,16]octadecane-7-carboxylic acid, i.e. smiles [c@@]123[c@@]4(c1)[c@h]([c@]1([c@](cc4)([c@h](cc1)[c@@h](cc(=o)c(=c)c(c)c)c)c)c)cc[c@h]2[c@@h]([c@@h](c[c@@h]3o)o)c(=o)o with ic50=0.0603796 microm

Benz, J. , Boehringer, M. , Hunziker, D. , Rudolph, M.G. , Stihle, M.

Primary Citation of Related Structures: 7G5E


Proteins
Molecule Chains Sequence Length Organism Sequence
Isoform 2 of Ectonucleotide pyrophosphatase/phosphodiesterase family member 2 A 846 Rattus Norvegicus FTASRIKRAEWDEGPPTVLSDSPWTATSGSCKGRCFELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARGWECTKDRCGEVRNEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIKVPECPAGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDPVFDASFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFWSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQLRLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPGTLGRIRAKSINNSKYDPKTIIAALTCKKPDQHFKPYMKQHLPKRLHYANNRRIEDIHLLVDRRWHVARKPLDVYKKPSGKCFFQGDHGFDNKVNSMQTVFVGYGPTFKYRTKVPPFENIELYNVMCDLLGLKPAPNNGTHGSLNHLLRTNTFRPTMPDEVSRPNYPGIMYLQSEFDLGCTCDDKVEPKNKLEELNKRLHTKGSTKERHLLYGRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPEHLTNCVRPDVRVSPGFSQNCLAYKNDKQMSYGFLFPPYLSSSPEAKYDAFLVTNMVPMYPAFKRVWAYFQRVLVKKYASERNGVNVISGPIFDYNYDGLRDTEDEIKQYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDESCNSSEDESKWVEELMKMHTARVRDIEHLTGLDFYRKTSRSYSEILTLKTYLHTYESEIGGRHHHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2023-06-05
Deposition Author(s): Benz, J. , Boehringer, M. , Hunziker, D. , Rudolph, M.G. , Stihle, M.