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FASTA Sequence PDB Format mmCIF Format
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7FI3

Archaeal oligopeptide permease a (oppa) from thermococcus kodakaraensis in complex with an endogenous pentapeptide

PDB DOI: 10.2210/pdb7fi3/pdb

Classification: PEPTIDE BINDING PROTEIN
Organism(s): Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct

Deposited: 2021-07-30
Deposition Author(s): Hara, K. , Hashimoto, H. , Kamei, N. , Konishi, K. , Yokoyama, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

Literature

Archaeal oligopeptide permease a (oppa) from thermococcus kodakaraensis in complex with an endogenous pentapeptide

Hara, K. , Hashimoto, H. , Kamei, N. , Konishi, K. , Yokoyama, H.

Primary Citation of Related Structures: 7FI3


Proteins
Molecule Chains Sequence Length Organism Sequence
ABC-type dipeptide/oligopeptide transport system A 732 Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct ADSDSVLKTVIYSSSGALFMGVWNPSSSGYSDTYSRRIADLVFDSGIPYGIDGVPHPYHCHVVDYKSDVTVPEDAVIFNSTTDTWVAAHAGETAKTYARIECDRPYFHDGHKLSAADVMYSLAWSWEWTTQDGDDDPYYDASEADWSGEYMNTILGIKLVEQTDDRMVFDVYHNHYFPASEIMTAAYVVPFTGTPWQLWYAMSELVAHNPKYSWSESSEDVEQLDQINPSHAQAIKEKLLELKQSKPIPEFLKPYIEDENAATAAYDSIAKFMDEHNHAVIGQGPYYVDEYQPENLFVRIKKFDKWTIPAFAEPEYQVDPYYKTIEVYGIQNEDTAILEVANGHYDILWYPFAAYRFTGLSDEQRANIKLYRSTSAFGDIVWNPVHDQDNPYVITVGDKKYFNPFAVRKVRFAIQYMVNRAYITQNIFQGSAGPMFTPWTSTETGFEYVRPVVDAFGLTEQSDEDLAMKLFEEGMQEAAQELAKMGYELKKGDDGKWYFNGEPVKVVGLGRVEDERKDVATYIVEEVMKKLGFDAEAKIVDRRTASGTVYTSDPSSYQWNFYTEGWVSSSNVKFSTTRIIQYYSSYWYAPGLVGWKWTPENTQRVTMEEVLKFLGNGDIQAGLDSLGLSYYNTVDKIQPLLNWTADDFALVIYSGEANGVKMDSEDKYWDFNRLGTAIGIYEGYRTFLYENWEFYAASKDIEIKLVDPVAGLASDWAIRSARPVVEHHHHHH
ABC-type dipeptide/oligopeptide transport system B 732 Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct ADSDSVLKTVIYSSSGALFMGVWNPSSSGYSDTYSRRIADLVFDSGIPYGIDGVPHPYHCHVVDYKSDVTVPEDAVIFNSTTDTWVAAHAGETAKTYARIECDRPYFHDGHKLSAADVMYSLAWSWEWTTQDGDDDPYYDASEADWSGEYMNTILGIKLVEQTDDRMVFDVYHNHYFPASEIMTAAYVVPFTGTPWQLWYAMSELVAHNPKYSWSESSEDVEQLDQINPSHAQAIKEKLLELKQSKPIPEFLKPYIEDENAATAAYDSIAKFMDEHNHAVIGQGPYYVDEYQPENLFVRIKKFDKWTIPAFAEPEYQVDPYYKTIEVYGIQNEDTAILEVANGHYDILWYPFAAYRFTGLSDEQRANIKLYRSTSAFGDIVWNPVHDQDNPYVITVGDKKYFNPFAVRKVRFAIQYMVNRAYITQNIFQGSAGPMFTPWTSTETGFEYVRPVVDAFGLTEQSDEDLAMKLFEEGMQEAAQELAKMGYELKKGDDGKWYFNGEPVKVVGLGRVEDERKDVATYIVEEVMKKLGFDAEAKIVDRRTASGTVYTSDPSSYQWNFYTEGWVSSSNVKFSTTRIIQYYSSYWYAPGLVGWKWTPENTQRVTMEEVLKFLGNGDIQAGLDSLGLSYYNTVDKIQPLLNWTADDFALVIYSGEANGVKMDSEDKYWDFNRLGTAIGIYEGYRTFLYENWEFYAASKDIEIKLVDPVAGLASDWAIRSARPVVEHHHHHH
ABC-type dipeptide/oligopeptide transport system C 732 Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct ADSDSVLKTVIYSSSGALFMGVWNPSSSGYSDTYSRRIADLVFDSGIPYGIDGVPHPYHCHVVDYKSDVTVPEDAVIFNSTTDTWVAAHAGETAKTYARIECDRPYFHDGHKLSAADVMYSLAWSWEWTTQDGDDDPYYDASEADWSGEYMNTILGIKLVEQTDDRMVFDVYHNHYFPASEIMTAAYVVPFTGTPWQLWYAMSELVAHNPKYSWSESSEDVEQLDQINPSHAQAIKEKLLELKQSKPIPEFLKPYIEDENAATAAYDSIAKFMDEHNHAVIGQGPYYVDEYQPENLFVRIKKFDKWTIPAFAEPEYQVDPYYKTIEVYGIQNEDTAILEVANGHYDILWYPFAAYRFTGLSDEQRANIKLYRSTSAFGDIVWNPVHDQDNPYVITVGDKKYFNPFAVRKVRFAIQYMVNRAYITQNIFQGSAGPMFTPWTSTETGFEYVRPVVDAFGLTEQSDEDLAMKLFEEGMQEAAQELAKMGYELKKGDDGKWYFNGEPVKVVGLGRVEDERKDVATYIVEEVMKKLGFDAEAKIVDRRTASGTVYTSDPSSYQWNFYTEGWVSSSNVKFSTTRIIQYYSSYWYAPGLVGWKWTPENTQRVTMEEVLKFLGNGDIQAGLDSLGLSYYNTVDKIQPLLNWTADDFALVIYSGEANGVKMDSEDKYWDFNRLGTAIGIYEGYRTFLYENWEFYAASKDIEIKLVDPVAGLASDWAIRSARPVVEHHHHHH
ABC-type dipeptide/oligopeptide transport system D 732 Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct ADSDSVLKTVIYSSSGALFMGVWNPSSSGYSDTYSRRIADLVFDSGIPYGIDGVPHPYHCHVVDYKSDVTVPEDAVIFNSTTDTWVAAHAGETAKTYARIECDRPYFHDGHKLSAADVMYSLAWSWEWTTQDGDDDPYYDASEADWSGEYMNTILGIKLVEQTDDRMVFDVYHNHYFPASEIMTAAYVVPFTGTPWQLWYAMSELVAHNPKYSWSESSEDVEQLDQINPSHAQAIKEKLLELKQSKPIPEFLKPYIEDENAATAAYDSIAKFMDEHNHAVIGQGPYYVDEYQPENLFVRIKKFDKWTIPAFAEPEYQVDPYYKTIEVYGIQNEDTAILEVANGHYDILWYPFAAYRFTGLSDEQRANIKLYRSTSAFGDIVWNPVHDQDNPYVITVGDKKYFNPFAVRKVRFAIQYMVNRAYITQNIFQGSAGPMFTPWTSTETGFEYVRPVVDAFGLTEQSDEDLAMKLFEEGMQEAAQELAKMGYELKKGDDGKWYFNGEPVKVVGLGRVEDERKDVATYIVEEVMKKLGFDAEAKIVDRRTASGTVYTSDPSSYQWNFYTEGWVSSSNVKFSTTRIIQYYSSYWYAPGLVGWKWTPENTQRVTMEEVLKFLGNGDIQAGLDSLGLSYYNTVDKIQPLLNWTADDFALVIYSGEANGVKMDSEDKYWDFNRLGTAIGIYEGYRTFLYENWEFYAASKDIEIKLVDPVAGLASDWAIRSARPVVEHHHHHH
endogenous pentapeptide E 5 Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct XXXXX
endogenous pentapeptide F 5 Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct XXXXX
endogenous pentapeptide G 5 Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct XXXXX
endogenous pentapeptide H 5 Thermococcus Kodakarensis (Strain Atcc Baa-918 / Jcm 12380 / Kod1) , Synthetic Construct XXXXX
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-07-30
Deposition Author(s): Hara, K. , Hashimoto, H. , Kamei, N. , Konishi, K. , Yokoyama, H.