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7FBJ

Crystal structure of sars-cov-2 receptor binding domain in complex with neutralizing nanobody 17f6

PDB DOI: 10.2210/pdb7fbj/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2021-07-11
Deposition Author(s): Feng, B. , Liu, J. , Xu, T. , Zhu, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å

7fbj
Literature

Crystal structure of sars-cov-2 receptor binding domain in complex with neutralizing nanobody 17f6

Feng, B. , Liu, J. , Xu, T. , Zhu, J.

Primary Citation of Related Structures: 7FBJ


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 230 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 DAAQPAITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPAAARGGPEQKLISEEDLNSAVDHHHHHH
Spike protein S1 C 230 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 DAAQPAITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPAAARGGPEQKLISEEDLNSAVDHHHHHH
Spike protein S1 E 230 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 DAAQPAITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPAAARGGPEQKLISEEDLNSAVDHHHHHH
Spike protein S1 G 230 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 DAAQPAITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPAAARGGPEQKLISEEDLNSAVDHHHHHH
Spike protein S1 I 230 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 DAAQPAITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPAAARGGPEQKLISEEDLNSAVDHHHHHH
Spike protein S1 K 230 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 DAAQPAITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPAAARGGPEQKLISEEDLNSAVDHHHHHH
Spike protein S1 M 230 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 DAAQPAITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPAAARGGPEQKLISEEDLNSAVDHHHHHH
Spike protein S1 O 230 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 DAAQPAITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPAAARGGPEQKLISEEDLNSAVDHHHHHH
New antigen receptor variable domain B 127 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 MAMAERVEQTPTTTTKETGESLTINCVLRDSSCALDSTYWYFTKKGATKKESLSNGGRYAETVNKASKSFSLRISDLRVEDSGTYHCRAYSLSAGMCAWMGYIEGGGTIVTVNSSGSSGLEHHHHHH
New antigen receptor variable domain D 127 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 MAMAERVEQTPTTTTKETGESLTINCVLRDSSCALDSTYWYFTKKGATKKESLSNGGRYAETVNKASKSFSLRISDLRVEDSGTYHCRAYSLSAGMCAWMGYIEGGGTIVTVNSSGSSGLEHHHHHH
New antigen receptor variable domain F 127 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 MAMAERVEQTPTTTTKETGESLTINCVLRDSSCALDSTYWYFTKKGATKKESLSNGGRYAETVNKASKSFSLRISDLRVEDSGTYHCRAYSLSAGMCAWMGYIEGGGTIVTVNSSGSSGLEHHHHHH
New antigen receptor variable domain H 127 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 MAMAERVEQTPTTTTKETGESLTINCVLRDSSCALDSTYWYFTKKGATKKESLSNGGRYAETVNKASKSFSLRISDLRVEDSGTYHCRAYSLSAGMCAWMGYIEGGGTIVTVNSSGSSGLEHHHHHH
New antigen receptor variable domain J 127 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 MAMAERVEQTPTTTTKETGESLTINCVLRDSSCALDSTYWYFTKKGATKKESLSNGGRYAETVNKASKSFSLRISDLRVEDSGTYHCRAYSLSAGMCAWMGYIEGGGTIVTVNSSGSSGLEHHHHHH
New antigen receptor variable domain L 127 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 MAMAERVEQTPTTTTKETGESLTINCVLRDSSCALDSTYWYFTKKGATKKESLSNGGRYAETVNKASKSFSLRISDLRVEDSGTYHCRAYSLSAGMCAWMGYIEGGGTIVTVNSSGSSGLEHHHHHH
New antigen receptor variable domain N 127 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 MAMAERVEQTPTTTTKETGESLTINCVLRDSSCALDSTYWYFTKKGATKKESLSNGGRYAETVNKASKSFSLRISDLRVEDSGTYHCRAYSLSAGMCAWMGYIEGGGTIVTVNSSGSSGLEHHHHHH
New antigen receptor variable domain P 127 Chiloscyllium Plagiosum , Severe Acute Respiratory Syndrome Coronavirus 2 MAMAERVEQTPTTTTKETGESLTINCVLRDSSCALDSTYWYFTKKGATKKESLSNGGRYAETVNKASKSFSLRISDLRVEDSGTYHCRAYSLSAGMCAWMGYIEGGGTIVTVNSSGSSGLEHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-07-11
Deposition Author(s): Feng, B. , Liu, J. , Xu, T. , Zhu, J.