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FASTA Sequence PDB Format mmCIF Format
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7F4V

Cryo-em structure of a primordial cyanobacterial photosystem i

PDB DOI: 10.2210/pdb7f4v/pdb

Classification: PHOTOSYNTHESIS
Organism(s): Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421)

Deposited: 2021-06-21
Deposition Author(s): Hamaguchi, T. , Kato, K. , Kawakami, K. , Nagao, R. , Shen, J.R. , Yonekura, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.04 Å

7f4v
Literature

Cryo-em structure of a primordial cyanobacterial photosystem i

Hamaguchi, T. , Kato, K. , Kawakami, K. , Nagao, R. , Shen, J.R. , Yonekura, K.

Primary Citation of Related Structures: 7F4V


Proteins
Molecule Chains Sequence Length Organism Sequence
Photosystem I P700 chlorophyll a apoprotein A1 AA 783 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MSTTPQEREKPVRVLVDNDPVPTSTEKWGKPGWFERNLARGPKTTTWIWDLHALAHDFETHTSDKEEISRKIFSAHFGHLAVVCVWLSGMFWHGAYFSNFTAWMENPLGLKPSAQTVWPVFGQEILNDPSTVAKGFEQGGIVITSGLFHLWRAVGFTTTGQLAAMSIAMLIIAALFLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLFGLGSLFWTGHLIHVALPVKAQLDAGIAPAQVNPFAGLDYGLMGQYFPKGFGPNGGLGAFFTLNWGQFTDFLTFKGGLEPATGALYLTDIAHHHLAIATLFIIAGHMYRTNWGIGHSIKEMLEAHKGPLTGEGHRGLYEVLTTSWHAQLAINLAMAGSITIIVAHHMYAMNPYPYMGTDYATQISLFTHHMWIGGFLIVGAGAHAAIFMVRDYDPVTNQNNLLDRVLRHRDAIISHLNWVTLFLGFHSFGLYVHNDTMQALGRPRDMFADFAIPLQPVFAQWIQNIHAAAPGGATAPWVGGTSPTWYTGALSSAATLQANQVLALANDKISISPIHLGTADFMVHHIFALCIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQSSAWDHVFLGLFWMYNTISVVIFHFSWKMQSDVWGTVDRSTGAVNHIIGNTDVLLGGQTVALSQYAASSININGWLRDFLWAQSSAVINSYGGPLSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSITQGRAVGVAHYLLGGIATTWAFFLARFLALP
Photosystem I P700 chlorophyll a apoprotein A1 BA 783 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MSTTPQEREKPVRVLVDNDPVPTSTEKWGKPGWFERNLARGPKTTTWIWDLHALAHDFETHTSDKEEISRKIFSAHFGHLAVVCVWLSGMFWHGAYFSNFTAWMENPLGLKPSAQTVWPVFGQEILNDPSTVAKGFEQGGIVITSGLFHLWRAVGFTTTGQLAAMSIAMLIIAALFLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLFGLGSLFWTGHLIHVALPVKAQLDAGIAPAQVNPFAGLDYGLMGQYFPKGFGPNGGLGAFFTLNWGQFTDFLTFKGGLEPATGALYLTDIAHHHLAIATLFIIAGHMYRTNWGIGHSIKEMLEAHKGPLTGEGHRGLYEVLTTSWHAQLAINLAMAGSITIIVAHHMYAMNPYPYMGTDYATQISLFTHHMWIGGFLIVGAGAHAAIFMVRDYDPVTNQNNLLDRVLRHRDAIISHLNWVTLFLGFHSFGLYVHNDTMQALGRPRDMFADFAIPLQPVFAQWIQNIHAAAPGGATAPWVGGTSPTWYTGALSSAATLQANQVLALANDKISISPIHLGTADFMVHHIFALCIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQSSAWDHVFLGLFWMYNTISVVIFHFSWKMQSDVWGTVDRSTGAVNHIIGNTDVLLGGQTVALSQYAASSININGWLRDFLWAQSSAVINSYGGPLSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSITQGRAVGVAHYLLGGIATTWAFFLARFLALP
Photosystem I P700 chlorophyll a apoprotein A1 CA 783 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MSTTPQEREKPVRVLVDNDPVPTSTEKWGKPGWFERNLARGPKTTTWIWDLHALAHDFETHTSDKEEISRKIFSAHFGHLAVVCVWLSGMFWHGAYFSNFTAWMENPLGLKPSAQTVWPVFGQEILNDPSTVAKGFEQGGIVITSGLFHLWRAVGFTTTGQLAAMSIAMLIIAALFLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLFGLGSLFWTGHLIHVALPVKAQLDAGIAPAQVNPFAGLDYGLMGQYFPKGFGPNGGLGAFFTLNWGQFTDFLTFKGGLEPATGALYLTDIAHHHLAIATLFIIAGHMYRTNWGIGHSIKEMLEAHKGPLTGEGHRGLYEVLTTSWHAQLAINLAMAGSITIIVAHHMYAMNPYPYMGTDYATQISLFTHHMWIGGFLIVGAGAHAAIFMVRDYDPVTNQNNLLDRVLRHRDAIISHLNWVTLFLGFHSFGLYVHNDTMQALGRPRDMFADFAIPLQPVFAQWIQNIHAAAPGGATAPWVGGTSPTWYTGALSSAATLQANQVLALANDKISISPIHLGTADFMVHHIFALCIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQSSAWDHVFLGLFWMYNTISVVIFHFSWKMQSDVWGTVDRSTGAVNHIIGNTDVLLGGQTVALSQYAASSININGWLRDFLWAQSSAVINSYGGPLSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSITQGRAVGVAHYLLGGIATTWAFFLARFLALP
Photosystem I reaction center subunit XII AM 34 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MAATVVSGAQVAIAFVVALIAGIAALLLSTALGK
Photosystem I reaction center subunit XII BM 34 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MAATVVSGAQVAIAFVVALIAGIAALLLSTALGK
Photosystem I reaction center subunit XII CM 34 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MAATVVSGAQVAIAFVVALIAGIAALLLSTALGK
Photosystem I P700 chlorophyll a apoprotein A2 AB 872 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MATRFPKFSQDLAQDPTTRRIWYGIATAHDFESHDGMTEESLYQKLFATHFGHLAIIFLWSSGNLFHIAWQGNFEQWVSNPTGVVPIAHAIWDPHFGKGAVEAFTPEGGAGPVNAAYSGLYYLYYTLGMRFNSDLYQGSIFLMVLATVFLIAGWLHLQPRFRPSLAWFKNAESRLNHHLSALFGVSSLAFAGHMIHVAIPAARGQRVDWSNFLNTLPHPAGLAPFFTGNWGVYADPQAGPPILTFIGGLNPATGTLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILDAHKGPLTGEGHRGLYDTINNSLHFQLGLALASLGVVTSLVAQHTYALPAYFYMPQDHTTMAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPKANENNVLARMLEHKEALISHLSWVSLFLGFHTLGLYVHNDVMLAFGRPEDQLLIEPVFAQFVQVQSGKIIEGIPALFGGPGVTAPGEFLTGWLGSVNANNSPIFLPIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGFAFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKWISIWGDNVAQFNASSTYLMGWLRDYLWANSAPLIGGYSPSGGTNALSVWAWMFLFGHLVWATGFMFLIAWRGYWQELIETLVWAHERTPLANLVRWKDKPVAMSIVQGRLVGLAHFTIGYILTYAAFLIASTAALYPNGPAAFTPAISAEQAKGVLSEFKAKPVPGGVMLLLPENIVFDFDKSSVKLDADPALNRVVGVIQFYGSEPVEILGHTDSLGEDAYNQKLSEERASAVKAFFEKKGIEAERLTAKGYGETKPVAPNAKPDGSDNPDGRQQNRRVEILIKTEVVPVS
Photosystem I P700 chlorophyll a apoprotein A2 BB 872 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MATRFPKFSQDLAQDPTTRRIWYGIATAHDFESHDGMTEESLYQKLFATHFGHLAIIFLWSSGNLFHIAWQGNFEQWVSNPTGVVPIAHAIWDPHFGKGAVEAFTPEGGAGPVNAAYSGLYYLYYTLGMRFNSDLYQGSIFLMVLATVFLIAGWLHLQPRFRPSLAWFKNAESRLNHHLSALFGVSSLAFAGHMIHVAIPAARGQRVDWSNFLNTLPHPAGLAPFFTGNWGVYADPQAGPPILTFIGGLNPATGTLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILDAHKGPLTGEGHRGLYDTINNSLHFQLGLALASLGVVTSLVAQHTYALPAYFYMPQDHTTMAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPKANENNVLARMLEHKEALISHLSWVSLFLGFHTLGLYVHNDVMLAFGRPEDQLLIEPVFAQFVQVQSGKIIEGIPALFGGPGVTAPGEFLTGWLGSVNANNSPIFLPIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGFAFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKWISIWGDNVAQFNASSTYLMGWLRDYLWANSAPLIGGYSPSGGTNALSVWAWMFLFGHLVWATGFMFLIAWRGYWQELIETLVWAHERTPLANLVRWKDKPVAMSIVQGRLVGLAHFTIGYILTYAAFLIASTAALYPNGPAAFTPAISAEQAKGVLSEFKAKPVPGGVMLLLPENIVFDFDKSSVKLDADPALNRVVGVIQFYGSEPVEILGHTDSLGEDAYNQKLSEERASAVKAFFEKKGIEAERLTAKGYGETKPVAPNAKPDGSDNPDGRQQNRRVEILIKTEVVPVS
Photosystem I P700 chlorophyll a apoprotein A2 CB 872 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MATRFPKFSQDLAQDPTTRRIWYGIATAHDFESHDGMTEESLYQKLFATHFGHLAIIFLWSSGNLFHIAWQGNFEQWVSNPTGVVPIAHAIWDPHFGKGAVEAFTPEGGAGPVNAAYSGLYYLYYTLGMRFNSDLYQGSIFLMVLATVFLIAGWLHLQPRFRPSLAWFKNAESRLNHHLSALFGVSSLAFAGHMIHVAIPAARGQRVDWSNFLNTLPHPAGLAPFFTGNWGVYADPQAGPPILTFIGGLNPATGTLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILDAHKGPLTGEGHRGLYDTINNSLHFQLGLALASLGVVTSLVAQHTYALPAYFYMPQDHTTMAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPKANENNVLARMLEHKEALISHLSWVSLFLGFHTLGLYVHNDVMLAFGRPEDQLLIEPVFAQFVQVQSGKIIEGIPALFGGPGVTAPGEFLTGWLGSVNANNSPIFLPIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGFAFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKWISIWGDNVAQFNASSTYLMGWLRDYLWANSAPLIGGYSPSGGTNALSVWAWMFLFGHLVWATGFMFLIAWRGYWQELIETLVWAHERTPLANLVRWKDKPVAMSIVQGRLVGLAHFTIGYILTYAAFLIASTAALYPNGPAAFTPAISAEQAKGVLSEFKAKPVPGGVMLLLPENIVFDFDKSSVKLDADPALNRVVGVIQFYGSEPVEILGHTDSLGEDAYNQKLSEERASAVKAFFEKKGIEAERLTAKGYGETKPVAPNAKPDGSDNPDGRQQNRRVEILIKTEVVPVS
Photosystem I iron-sulfur center AC 81 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGNKAGTIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY
Photosystem I iron-sulfur center BC 81 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGNKAGTIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY
Photosystem I iron-sulfur center CC 81 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGNKAGTIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY
Photosystem I reaction center subunit II AD 144 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MADVKELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV
Photosystem I reaction center subunit II BD 144 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MADVKELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV
Photosystem I reaction center subunit II CD 144 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MADVKELPFGGSTPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGAATMVAGTNVLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSNPGREVVGYVPRKIGDNPNPVDVKFTGKETFDV
Photosystem I reaction center subunit IV AE 65 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MAIERGAKVRILRKESYWYREVGTVASVDKSEKTIYPVTVRFEKVNYSGINTNNFGVSELEEVEA
Photosystem I reaction center subunit IV BE 65 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MAIERGAKVRILRKESYWYREVGTVASVDKSEKTIYPVTVRFEKVNYSGINTNNFGVSELEEVEA
Photosystem I reaction center subunit IV CE 65 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MAIERGAKVRILRKESYWYREVGTVASVDKSEKTIYPVTVRFEKVNYSGINTNNFGVSELEEVEA
Photosystem I reaction center subunit III AF 181 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MSNKQSRVPFGAALLGILTLLLLFETGAFAQTQVKDPLKLCKDVPAYQELKTQRLEAAQKAQADGKPVTFNEAGTKQKFERYDTAYCGQDGYPHLITSGQLDRAGDFLIPSVLFLWIAGALGWAGRLYLAESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRVPEDRVTISPR
Photosystem I reaction center subunit III BF 181 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MSNKQSRVPFGAALLGILTLLLLFETGAFAQTQVKDPLKLCKDVPAYQELKTQRLEAAQKAQADGKPVTFNEAGTKQKFERYDTAYCGQDGYPHLITSGQLDRAGDFLIPSVLFLWIAGALGWAGRLYLAESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRVPEDRVTISPR
Photosystem I reaction center subunit III CF 181 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MSNKQSRVPFGAALLGILTLLLLFETGAFAQTQVKDPLKLCKDVPAYQELKTQRLEAAQKAQADGKPVTFNEAGTKQKFERYDTAYCGQDGYPHLITSGQLDRAGDFLIPSVLFLWIAGALGWAGRLYLAESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRVPEDRVTISPR
Photosystem I reaction center subunit Z AI 35 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MQSYNVFPALVIITTLVVPFMAAAALLFIIERDPS
Photosystem I reaction center subunit Z BI 35 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MQSYNVFPALVIITTLVVPFMAAAALLFIIERDPS
Photosystem I reaction center subunit Z CI 35 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MQSYNVFPALVIITTLVVPFMAAAALLFIIERDPS
Unknown protein AJ 33 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Unknown protein BJ 33 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Unknown protein CJ 33 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Photosystem I reaction center subunit XI AL 147 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MTLARYVYTPDPQEGTLLTPVNNSTAIRWFIDNLPINRVGMDEFTRGLEIGMAHGYWLIGPFALLGPLRNTELGLVAGLVSTIGLLLISTIGLSGYASLVEDVPTEFDRKGWSRLAGGFLVGGVGGAIFAFAILQFFPLVSAIARIP
Photosystem I reaction center subunit XI BL 147 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MTLARYVYTPDPQEGTLLTPVNNSTAIRWFIDNLPINRVGMDEFTRGLEIGMAHGYWLIGPFALLGPLRNTELGLVAGLVSTIGLLLISTIGLSGYASLVEDVPTEFDRKGWSRLAGGFLVGGVGGAIFAFAILQFFPLVSAIARIP
Photosystem I reaction center subunit XI CL 147 Gloeobacter Violaceus (Strain Atcc 29082 / Pcc 7421) MTLARYVYTPDPQEGTLLTPVNNSTAIRWFIDNLPINRVGMDEFTRGLEIGMAHGYWLIGPFALLGPLRNTELGLVAGLVSTIGLLLISTIGLSGYASLVEDVPTEFDRKGWSRLAGGFLVGGVGGAIFAFAILQFFPLVSAIARIP
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-06-21
Deposition Author(s): Hamaguchi, T. , Kato, K. , Kawakami, K. , Nagao, R. , Shen, J.R. , Yonekura, K.