7ED5
A dual mechanism of action of at-527 against sars-cov-2 polymerase
PDB DOI: 10.2210/pdb7ed5/pdb
Classification: VIRAL PROTEIN Organism(s): Gammaretrovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2021-03-15 Deposition Author(s): Alvarez, K. , Canard, B. , Colla, P. , Decroly, E. , Delpal, A. , El Kazzi, P. , Eydoux, C. , Falcou, C. , Fattorini, V. , Feracci, M. , Ferron, F. , Gauffre, P. , Good, S. , Guillemot, J.-C. , Lin, K. , Moussa, A. , Sama, B. , Selisko, B. , Shannon, A. , Shi, H. , Sommadossi, J.-P. , Yan, X.D. , Zhu, Y.X.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.98 Å
A dual mechanism of action of at-527 against sars-cov-2 polymerase
Alvarez, K. , Canard, B. , Colla, P. , Decroly, E. , Delpal, A. , El Kazzi, P. , Eydoux, C. , Falcou, C. , Fattorini, V. , Feracci, M. , Ferron, F. , Gauffre, P. , Good, S. , Guillemot, J.-C. , Lin, K. , Moussa, A. , Sama, B. , Selisko, B. , Shannon, A. , Shi, H. , Sommadossi, J.-P. , Yan, X.D. , Zhu, Y.X.
Primary Citation of Related Structures: 7ED5
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA-directed RNA polymerase | A | 956 | Gammaretrovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MHHHHHHHHWSHPQFEKENLYFQGSADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ |
| Non-structural protein 8 | B | 220 | Gammaretrovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MHHHHHHDYKDDDDKENLYFQGAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ |
| Non-structural protein 8 | D | 220 | Gammaretrovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MHHHHHHDYKDDDDKENLYFQGAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ |
| Non-structural protein 7 | C | 110 | Gammaretrovirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQGGGGSGLNDIFEAQKIEWHEHHHHHH |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (5'-R(P*GP*CP*UP*AP*UP*GP*UP*GP*AP*GP*AP*UP*UP*AP*AP*GP*UP*UP*AP*U*(AT9))-3') | i | 20 | NA | GCUAUGUGAGAUUAAGUUAU |
| RNA (5'-R(P*CP*CP*CP*CP*AP*UP*AP*AP*CP*UP*UP*AP*AP*UP*CP*UP*CP*AP*CP*AP*UP*AP*GP*C)-3') | j | 30 | NA | CCCCCCCCCCAUAACUUAAUCUCACAUAGC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-03-15 Deposition Author(s): Alvarez, K. , Canard, B. , Colla, P. , Decroly, E. , Delpal, A. , El Kazzi, P. , Eydoux, C. , Falcou, C. , Fattorini, V. , Feracci, M. , Ferron, F. , Gauffre, P. , Good, S. , Guillemot, J.-C. , Lin, K. , Moussa, A. , Sama, B. , Selisko, B. , Shannon, A. , Shi, H. , Sommadossi, J.-P. , Yan, X.D. , Zhu, Y.X.