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FASTA Sequence PDB Format mmCIF Format
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7EBY

Crystal structure of d-succinylase (dsa) from cupriavidus sp. p4-10-c

PDB DOI: 10.2210/pdb7eby/pdb

Classification: HYDROLASE
Organism(s): Cupriavidus Sp. P4-10-C

Deposited: 2021-03-11
Deposition Author(s): Sumida, Y. , Yamasaki, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

7eby
Literature

Crystal structure of d-succinylase (dsa) from cupriavidus sp. p4-10-c

Sumida, Y. , Yamasaki, M.

Primary Citation of Related Structures: 7EBY


Proteins
Molecule Chains Sequence Length Organism Sequence
D-succinylase A 824 Cupriavidus Sp. P4-10-C MRIVRRRPAATLLRHLALVAAALPVLAGTASAAPPTDRYAAPGLEKPASILIDRWGVPHIYAGTLYDAFYAQGFIAARDRLWQIDLWRKRGLGEMARDFGPAYVDGDRMARAVLYRGDMYREWLAYGSDAKRVAEAFVAGVNAYVALTEAQPELLPREFKQLGYKPSRWRAEDIVRIRHHGLTLNFTGEVDRATLYCQAKEQAARADWLRRELDPPITPTLPEGLDPCAVPAAALKKAYTLATAAANFPKEAWQKASADAVPVDQLYAAVDANSDTGRSLGSNNWVIAGSRTSTGRPILANDPHRAHGAPSLRYVSHLNAPGLSVIGAGEPFLPGISIGHNGTIAFGLTRFYMDQEDLYVYETDPAQPKSYRYRGRWEPMETITEKITVRGEAEPRTVTIDFTRHGPVLHADDASHRAWALRAAWLDTGMAPYFGSMDYMRATNWDQFRAAMNRWGAPGENQVYADRNGNIGWIPGGLTVIRPNWDGLFPVPGDGRYEWAGYRNMDELPWAYNPSTGHIVTANENNIPPDHPAAKLGVGYEWSDSSRARRLKSLVAAAPVSSLRDSIAWQNDTVSLPAQRTLAVMRTVGNAGAAASLLQDPQVQRAVALLRGWDGNVRADSVPAALFEIWFSNHLRQAVVRAALPEDAAKLVGAGDAARVLAVLEQPDTWMPTARRDEVMLTSLKAAMAELERRSPSPEKLATWGTLHRAIFRHPLANIVDDATRAQYNVDAGGIGGSAFTPMNTSYRNSDYHLTAGASFRMVLDVGNWDQGRVVNTPGQSGDPGNSHYRDLAPIWAKGQTFPLVYSRKAVERAAEKRIELTPR
D-succinylase B 824 Cupriavidus Sp. P4-10-C MRIVRRRPAATLLRHLALVAAALPVLAGTASAAPPTDRYAAPGLEKPASILIDRWGVPHIYAGTLYDAFYAQGFIAARDRLWQIDLWRKRGLGEMARDFGPAYVDGDRMARAVLYRGDMYREWLAYGSDAKRVAEAFVAGVNAYVALTEAQPELLPREFKQLGYKPSRWRAEDIVRIRHHGLTLNFTGEVDRATLYCQAKEQAARADWLRRELDPPITPTLPEGLDPCAVPAAALKKAYTLATAAANFPKEAWQKASADAVPVDQLYAAVDANSDTGRSLGSNNWVIAGSRTSTGRPILANDPHRAHGAPSLRYVSHLNAPGLSVIGAGEPFLPGISIGHNGTIAFGLTRFYMDQEDLYVYETDPAQPKSYRYRGRWEPMETITEKITVRGEAEPRTVTIDFTRHGPVLHADDASHRAWALRAAWLDTGMAPYFGSMDYMRATNWDQFRAAMNRWGAPGENQVYADRNGNIGWIPGGLTVIRPNWDGLFPVPGDGRYEWAGYRNMDELPWAYNPSTGHIVTANENNIPPDHPAAKLGVGYEWSDSSRARRLKSLVAAAPVSSLRDSIAWQNDTVSLPAQRTLAVMRTVGNAGAAASLLQDPQVQRAVALLRGWDGNVRADSVPAALFEIWFSNHLRQAVVRAALPEDAAKLVGAGDAARVLAVLEQPDTWMPTARRDEVMLTSLKAAMAELERRSPSPEKLATWGTLHRAIFRHPLANIVDDATRAQYNVDAGGIGGSAFTPMNTSYRNSDYHLTAGASFRMVLDVGNWDQGRVVNTPGQSGDPGNSHYRDLAPIWAKGQTFPLVYSRKAVERAAEKRIELTPR
D-succinylase C 824 Cupriavidus Sp. P4-10-C MRIVRRRPAATLLRHLALVAAALPVLAGTASAAPPTDRYAAPGLEKPASILIDRWGVPHIYAGTLYDAFYAQGFIAARDRLWQIDLWRKRGLGEMARDFGPAYVDGDRMARAVLYRGDMYREWLAYGSDAKRVAEAFVAGVNAYVALTEAQPELLPREFKQLGYKPSRWRAEDIVRIRHHGLTLNFTGEVDRATLYCQAKEQAARADWLRRELDPPITPTLPEGLDPCAVPAAALKKAYTLATAAANFPKEAWQKASADAVPVDQLYAAVDANSDTGRSLGSNNWVIAGSRTSTGRPILANDPHRAHGAPSLRYVSHLNAPGLSVIGAGEPFLPGISIGHNGTIAFGLTRFYMDQEDLYVYETDPAQPKSYRYRGRWEPMETITEKITVRGEAEPRTVTIDFTRHGPVLHADDASHRAWALRAAWLDTGMAPYFGSMDYMRATNWDQFRAAMNRWGAPGENQVYADRNGNIGWIPGGLTVIRPNWDGLFPVPGDGRYEWAGYRNMDELPWAYNPSTGHIVTANENNIPPDHPAAKLGVGYEWSDSSRARRLKSLVAAAPVSSLRDSIAWQNDTVSLPAQRTLAVMRTVGNAGAAASLLQDPQVQRAVALLRGWDGNVRADSVPAALFEIWFSNHLRQAVVRAALPEDAAKLVGAGDAARVLAVLEQPDTWMPTARRDEVMLTSLKAAMAELERRSPSPEKLATWGTLHRAIFRHPLANIVDDATRAQYNVDAGGIGGSAFTPMNTSYRNSDYHLTAGASFRMVLDVGNWDQGRVVNTPGQSGDPGNSHYRDLAPIWAKGQTFPLVYSRKAVERAAEKRIELTPR
D-succinylase D 824 Cupriavidus Sp. P4-10-C MRIVRRRPAATLLRHLALVAAALPVLAGTASAAPPTDRYAAPGLEKPASILIDRWGVPHIYAGTLYDAFYAQGFIAARDRLWQIDLWRKRGLGEMARDFGPAYVDGDRMARAVLYRGDMYREWLAYGSDAKRVAEAFVAGVNAYVALTEAQPELLPREFKQLGYKPSRWRAEDIVRIRHHGLTLNFTGEVDRATLYCQAKEQAARADWLRRELDPPITPTLPEGLDPCAVPAAALKKAYTLATAAANFPKEAWQKASADAVPVDQLYAAVDANSDTGRSLGSNNWVIAGSRTSTGRPILANDPHRAHGAPSLRYVSHLNAPGLSVIGAGEPFLPGISIGHNGTIAFGLTRFYMDQEDLYVYETDPAQPKSYRYRGRWEPMETITEKITVRGEAEPRTVTIDFTRHGPVLHADDASHRAWALRAAWLDTGMAPYFGSMDYMRATNWDQFRAAMNRWGAPGENQVYADRNGNIGWIPGGLTVIRPNWDGLFPVPGDGRYEWAGYRNMDELPWAYNPSTGHIVTANENNIPPDHPAAKLGVGYEWSDSSRARRLKSLVAAAPVSSLRDSIAWQNDTVSLPAQRTLAVMRTVGNAGAAASLLQDPQVQRAVALLRGWDGNVRADSVPAALFEIWFSNHLRQAVVRAALPEDAAKLVGAGDAARVLAVLEQPDTWMPTARRDEVMLTSLKAAMAELERRSPSPEKLATWGTLHRAIFRHPLANIVDDATRAQYNVDAGGIGGSAFTPMNTSYRNSDYHLTAGASFRMVLDVGNWDQGRVVNTPGQSGDPGNSHYRDLAPIWAKGQTFPLVYSRKAVERAAEKRIELTPR
D-succinylase E 824 Cupriavidus Sp. P4-10-C MRIVRRRPAATLLRHLALVAAALPVLAGTASAAPPTDRYAAPGLEKPASILIDRWGVPHIYAGTLYDAFYAQGFIAARDRLWQIDLWRKRGLGEMARDFGPAYVDGDRMARAVLYRGDMYREWLAYGSDAKRVAEAFVAGVNAYVALTEAQPELLPREFKQLGYKPSRWRAEDIVRIRHHGLTLNFTGEVDRATLYCQAKEQAARADWLRRELDPPITPTLPEGLDPCAVPAAALKKAYTLATAAANFPKEAWQKASADAVPVDQLYAAVDANSDTGRSLGSNNWVIAGSRTSTGRPILANDPHRAHGAPSLRYVSHLNAPGLSVIGAGEPFLPGISIGHNGTIAFGLTRFYMDQEDLYVYETDPAQPKSYRYRGRWEPMETITEKITVRGEAEPRTVTIDFTRHGPVLHADDASHRAWALRAAWLDTGMAPYFGSMDYMRATNWDQFRAAMNRWGAPGENQVYADRNGNIGWIPGGLTVIRPNWDGLFPVPGDGRYEWAGYRNMDELPWAYNPSTGHIVTANENNIPPDHPAAKLGVGYEWSDSSRARRLKSLVAAAPVSSLRDSIAWQNDTVSLPAQRTLAVMRTVGNAGAAASLLQDPQVQRAVALLRGWDGNVRADSVPAALFEIWFSNHLRQAVVRAALPEDAAKLVGAGDAARVLAVLEQPDTWMPTARRDEVMLTSLKAAMAELERRSPSPEKLATWGTLHRAIFRHPLANIVDDATRAQYNVDAGGIGGSAFTPMNTSYRNSDYHLTAGASFRMVLDVGNWDQGRVVNTPGQSGDPGNSHYRDLAPIWAKGQTFPLVYSRKAVERAAEKRIELTPR
D-succinylase F 824 Cupriavidus Sp. P4-10-C MRIVRRRPAATLLRHLALVAAALPVLAGTASAAPPTDRYAAPGLEKPASILIDRWGVPHIYAGTLYDAFYAQGFIAARDRLWQIDLWRKRGLGEMARDFGPAYVDGDRMARAVLYRGDMYREWLAYGSDAKRVAEAFVAGVNAYVALTEAQPELLPREFKQLGYKPSRWRAEDIVRIRHHGLTLNFTGEVDRATLYCQAKEQAARADWLRRELDPPITPTLPEGLDPCAVPAAALKKAYTLATAAANFPKEAWQKASADAVPVDQLYAAVDANSDTGRSLGSNNWVIAGSRTSTGRPILANDPHRAHGAPSLRYVSHLNAPGLSVIGAGEPFLPGISIGHNGTIAFGLTRFYMDQEDLYVYETDPAQPKSYRYRGRWEPMETITEKITVRGEAEPRTVTIDFTRHGPVLHADDASHRAWALRAAWLDTGMAPYFGSMDYMRATNWDQFRAAMNRWGAPGENQVYADRNGNIGWIPGGLTVIRPNWDGLFPVPGDGRYEWAGYRNMDELPWAYNPSTGHIVTANENNIPPDHPAAKLGVGYEWSDSSRARRLKSLVAAAPVSSLRDSIAWQNDTVSLPAQRTLAVMRTVGNAGAAASLLQDPQVQRAVALLRGWDGNVRADSVPAALFEIWFSNHLRQAVVRAALPEDAAKLVGAGDAARVLAVLEQPDTWMPTARRDEVMLTSLKAAMAELERRSPSPEKLATWGTLHRAIFRHPLANIVDDATRAQYNVDAGGIGGSAFTPMNTSYRNSDYHLTAGASFRMVLDVGNWDQGRVVNTPGQSGDPGNSHYRDLAPIWAKGQTFPLVYSRKAVERAAEKRIELTPR
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-03-11
Deposition Author(s): Sumida, Y. , Yamasaki, M.