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FASTA Sequence PDB Format mmCIF Format
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7DCE

Cryo-em structure of human xkr8-basigin complex bound to fab fragment

PDB DOI: 10.2210/pdb7dce/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo Sapiens , Oryctolagus Cuniculus

Deposited: 2020-10-26
Deposition Author(s): Baba, T. , Kanai, R. , Kikkawa, M. , Miyazaki, T. , Nagata, S. , Nakagawa, A. , Narita, H. , Onishi, E. , Sakuragi, T. , Toyoshima, C. , Tsutsumi, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

Literature

Cryo-em structure of human xkr8-basigin complex bound to fab fragment

Baba, T. , Kanai, R. , Kikkawa, M. , Miyazaki, T. , Nagata, S. , Nakagawa, A. , Narita, H. , Onishi, E. , Sakuragi, T. , Toyoshima, C. , Tsutsumi, A.

Primary Citation of Related Structures: 7DCE


Proteins
Molecule Chains Sequence Length Organism Sequence
Isoform 2 of Basigin B 176 Homo Sapiens , Oryctolagus Cuniculus AGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMQGSESRFFVSSSQGRSELHIENLNMEADPGQYRCQGTSSKGSDQAIITLRVRSHLAALWPFLGIVAEVLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSSDYKDDDDK
XK-related protein 8 X 405 Homo Sapiens , Oryctolagus Cuniculus MPWSSRGALLRDLVLGVLGTAAFLLDLGTDLWAAVQYALGGRYLWAALVLALLGLASVALQLFSWLWLRADPAGLHGSQPPRRCLALLHLLQLGYLYRCVQELRQGLLVWQQEEPSEFDLAYADFLALDISMLRLFETFLETAPQLTLVLAIMLQSGRAEYYQWVGICTSFLGISWALLDYHRALRTCLPSKPLLGLGSSVIYFLWNLLLLWPRVLAVALFSALFPSYVALHFLGLWLVLLLWVWLQGTDFMPDPSSEWLYRVTVATILYFSWFNVAEGRTRGRAIIHFAFLLSDSILLVATWVTHSSWLPSGIPLQLWLPVGCGCFFLGLALRLVYYHWLHPSCCWKPDPDQVDGARSLLSPEGYQLPQNRRMTHLAQKFFPKAKDEAASPVKGVDEFENLYFQ
Heavy chain of Fab fragment H 217 Homo Sapiens , Oryctolagus Cuniculus QSVEESGGRLVTPGTPLTLTCTVSGFSLSDYAMNWVRQAPGKGLEWIGIIYASGSRYYASWAKGRFTISKTSTTVDLKITSPTTEDTATYFCARYYAGSDIWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
Light chain of Fab fragment L 218 Homo Sapiens , Oryctolagus Cuniculus ADVVMTQTPSSVSAAVGGTVTINCQASQSISAYLAWYQQKPGQPPKLLIYDASDLASGVSSRFKGSGSGTQFTLTISALECADAATYYCQSYYAIITYGAAFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDCTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-10-26
Deposition Author(s): Baba, T. , Kanai, R. , Kikkawa, M. , Miyazaki, T. , Nagata, S. , Nakagawa, A. , Narita, H. , Onishi, E. , Sakuragi, T. , Toyoshima, C. , Tsutsumi, A.