7C9R
Structure of photosynthetic lh1-rc super-complex of thiorhodovibrio strain 970
PDB DOI: 10.2210/pdb7c9r/pdb
Classification: PHOTOSYNTHESIS Organism(s): Thiorhodovibrio Sp. 970
Deposited: 2020-06-07 Deposition Author(s): Hall, M. , Humbel, B.M. , Imanishi, M. , Kanno, R. , Kimura, Y. , Madigan, M.T. , Makino, Y. , Mizoguchi, A. , Overmann, J. , Takenouchi, M. , Tani, K. , Wang-Otomo, Z.-Y. , Yu, L.-J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.82 Å
Structure of photosynthetic lh1-rc super-complex of thiorhodovibrio strain 970
Hall, M. , Humbel, B.M. , Imanishi, M. , Kanno, R. , Kimura, Y. , Madigan, M.T. , Makino, Y. , Mizoguchi, A. , Overmann, J. , Takenouchi, M. , Tani, K. , Wang-Otomo, Z.-Y. , Yu, L.-J.
Primary Citation of Related Structures: 7C9R
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosynthetic reaction center cytochrome c subunit | C | 396 | Thiorhodovibrio Sp. 970 | MKQRNHHALALLSLGVAAFITGCDFPPQDVVQTGYRGLGMQQNYNPKLLQKVIDATQVPDAIPAATPGGALAKDVYKNVQVLGDLSVNEFNRTMVALTTWVAPNEGCTYCHEGTNWESDGVYTKIASRRMLEMTRDTNSNWTGHVADTGVTCYTCHRGKPVPEHVWTTDPGPDIPSVFPSNGQNTIGYNVAYTALPFDPFTPFLLGENEIRVSGNTDLRNTNRKSIKQAEWTFALMTHFSEALGVNCTYCHNSRAFMDWNQSTPKRVPAWHAIRNVRDINIQYVEPLGEVLPASRKGPLGDPFKVNCLTCHQGAYKPLFGVPMAKDYPALYETAAVEEEAPAEAAPAAEAEAAPAEAVPVAEAPAEAAPVEAAPAAEAEAAPAEAAPAAPPVPADR |
| Alpha subunit 2 of light-harvesting 1 complex | 9 | 86 | Thiorhodovibrio Sp. 970 | MNSDKFAGMYKLWTFIDPRRTLIFIVAFQIMLGILIHMIVLGSDLNWHNDGIPRFYSPRPVDVAVGPAGIPLEIPGSPMPQARNYN |
| L subunit of the reaction center | L | 273 | Thiorhodovibrio Sp. 970 | MALLNFEKKYRVRGGTLVGGDLFDFWVGPFYVGFFGVSAVFFATLGTMLILFGAAIGPTLNIWQISIAPPDLSVGLGFAPIREGGLWQVITICAVGAFVSWALRQVEIARKLGMGLHVPFAFSFAILAYLTLVFFRPVLLGAWGHAFPYGLFSHLDWVSNVGYQTLHFHYNPAHMLAISFFFINTLALAMHGSLILSVVNPQKGEEVKTAEHENTVFRDIVGYSIGALAIHRLGLFLAINAAFWSAVCMILTGPFWTRGWPEWWMWWPNLPIW |
| Reaction center protein M chain | M | 324 | Thiorhodovibrio Sp. 970 | MPEYQNIFNKVQVREPAYPGVELPKGSLPRVGKPIFSYWLGKIGDAQIGPLYLGGWGIASLISGFIALEVIGLNMLASVGWDPRLFLKEFFWLGLEPPPPAYGLSIPPLAEGGWWLIAGLFLTMSLLLWWVRVYKRAKDLGMGTHLSWAFAVAILFFLTLGFIRPVLMGSWGEAPPFGIFPHLDWTAAISIRYGNFYYNPFHGLSIAFMYGSAVLFAMHGGTILAVSRYGGDREIDQITDRGTAAERAMLFWRWCMGFNASMESIHRWAWWFAVFCIINSILGIILTGTVVDNWYLWAVKHGVAPSYPSELTIDNPYLTQGVAQ |
| Photosynthetic reaction center, subunit H, bacterial | H | 258 | Thiorhodovibrio Sp. 970 | MEFGYITQYFDLAQVTLWAFWLSLLSVIFFNRREDKREGYPQEAVQIFGKTILTEGFPFMPAPKTFKLPHNGGDVVKPGPERPQYDFKLEQVDRFAGAAYRPVGNPMLAGVGPGAYAVRANKPDLTNAGDPRIVPMRVAKHFAVVDKDPDPRGMTVIGADGQVGGKVTEIWVDRAEPQVRYLELEAGNKKKVLVPIALCVIKGQKREVKVRSINGIHFNDVPTLSNYDQITLAEEDKVSAYYGAGTLYATPNRAESVL |
| Alpha subunit 1 of light-harvesting 1 complex | A | 73 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAAQ |
| Alpha subunit 1 of light-harvesting 1 complex | D | 73 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAAQ |
| Alpha subunit 1 of light-harvesting 1 complex | F | 73 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAAQ |
| Alpha subunit 1 of light-harvesting 1 complex | I | 73 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAAQ |
| Alpha subunit 1 of light-harvesting 1 complex | K | 73 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAAQ |
| Alpha subunit 1 of light-harvesting 1 complex | O | 73 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAAQ |
| Antenna complex alpha/beta subunit | B | 46 | Thiorhodovibrio Sp. 970 | MAEKPSTGLTESEAKEFHGLFMASMTLWFGLVVLAHILSWMYRPWL |
| Antenna complex alpha/beta subunit | P | 46 | Thiorhodovibrio Sp. 970 | MAEKPSTGLTESEAKEFHGLFMASMTLWFGLVVLAHILSWMYRPWL |
| Antenna complex alpha/beta subunit | 4 | 46 | Thiorhodovibrio Sp. 970 | MAEKPSTGLTESEAKEFHGLFMASMTLWFGLVVLAHILSWMYRPWL |
| Antenna complex alpha/beta subunit | E | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | G | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | J | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | N | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | R | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | T | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | V | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | X | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | Z | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | 2 | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | 6 | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | 8 | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | 0 | 46 | Thiorhodovibrio Sp. 970 | MAEKSTTGLTEAESKEFHGIFMASMTLWFGLVVLAHILSWLYRPWL |
| Antenna complex alpha/beta subunit | Q | 81 | Thiorhodovibrio Sp. 970 | MSNDNFTGTYKMWMFIDPRRALLFIASFQILLGILIHMIVLGSDLNWHSDGIPKFYFPNAAEASAPIDMSPIPSARNFKFD |
| LHC domain-containing protein | S | 77 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAALKDAQ |
| LHC domain-containing protein | U | 77 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAALKDAQ |
| LHC domain-containing protein | W | 77 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAALKDAQ |
| LHC domain-containing protein | Y | 77 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAALKDAQ |
| LHC domain-containing protein | 1 | 77 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAALKDAQ |
| LHC domain-containing protein | 3 | 77 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAALKDAQ |
| LHC domain-containing protein | 5 | 77 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAALKDAQ |
| LHC domain-containing protein | 7 | 77 | Thiorhodovibrio Sp. 970 | MNAKSFDGMHKLWMIMNPVSTLWAIFIFQIFLGLLIHMVVLSSDLNWHDDQIPVGYQLQGETLPVNLEMKAALKDAQ |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-06-07 Deposition Author(s): Hall, M. , Humbel, B.M. , Imanishi, M. , Kanno, R. , Kimura, Y. , Madigan, M.T. , Makino, Y. , Mizoguchi, A. , Overmann, J. , Takenouchi, M. , Tani, K. , Wang-Otomo, Z.-Y. , Yu, L.-J.