7C94
Crystal structure of the anti-human podoplanin antibody fab fragment complex with glycopeptide
PDB DOI: 10.2210/pdb7c94/pdb
Classification: IMMUNE SYSTEM Organism(s): Mus Musculus , Synthetic Construct
Deposited: 2020-06-04 Deposition Author(s): Kaneko, M.K. , Kato, Y. , Murata, T. , Nakamura, S. , Naruchi, K. , Ogasawara, S. , Shimabukuro, J. , Suzuki, K. , Tukahara, N.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.84 Å
Crystal structure of the anti-human podoplanin antibody fab fragment complex with glycopeptide
Kaneko, M.K. , Kato, Y. , Murata, T. , Nakamura, S. , Naruchi, K. , Ogasawara, S. , Shimabukuro, J. , Suzuki, K. , Tukahara, N.
Primary Citation of Related Structures: 7C94
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Light chain of Fab fragment | A | 220 | Mus Musculus , Synthetic Construct | DIVMTQSPSSLAMSVGQKVTMNCKSSQSLLNSSNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSAQAEDLADYFCQQYYSTPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
| Light chain of Fab fragment | D | 220 | Mus Musculus , Synthetic Construct | DIVMTQSPSSLAMSVGQKVTMNCKSSQSLLNSSNQKNYLAWYQQKPGQSPKLLVYFASTRESGVPDRFIGSGSGTDFTLTISSAQAEDLADYFCQQYYSTPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
| Heavy chain of Fab fragment | B | 225 | Mus Musculus , Synthetic Construct | EVQLVESGGGLVKPGGSLKLSCAASGFTFTRYAMSWVRQTPEKRLEWVATISNGGSYTYYLDSVKGRFTLSRDNAKNTLYLQMSSLRSEDTAMYYCARREGGQAGPAWFVYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG |
| Heavy chain of Fab fragment | E | 225 | Mus Musculus , Synthetic Construct | EVQLVESGGGLVKPGGSLKLSCAASGFTFTRYAMSWVRQTPEKRLEWVATISNGGSYTYYLDSVKGRFTLSRDNAKNTLYLQMSSLRSEDTAMYYCARREGGQAGPAWFVYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG |
| Peptide from Podoplanin | C | 18 | Mus Musculus , Synthetic Construct | LVATSVNSVTGIRIEDLP |
| Peptide from Podoplanin | F | 18 | Mus Musculus , Synthetic Construct | LVATSVNSVTGIRIEDLP |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2020-06-04 Deposition Author(s): Kaneko, M.K. , Kato, Y. , Murata, T. , Nakamura, S. , Naruchi, K. , Ogasawara, S. , Shimabukuro, J. , Suzuki, K. , Tukahara, N.