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FASTA Sequence PDB Format mmCIF Format
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7C7L

Cryo-em structure of the cas12f1-sgrna-target dna complex

PDB DOI: 10.2210/pdb7c7l/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Uncultured Archaeon , Synthetic Construct

Deposited: 2020-05-26
Deposition Author(s): Hirano, H. , Kobayashi, K. , Kusakizako, T. , Nakagawa, R. , Nishimasu, H. , Nishizawa, T. , Nureki, O. , Okazaki, S. , Takeda, N.S. , Yamashita, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Literature

Cryo-em structure of the cas12f1-sgrna-target dna complex

Hirano, H. , Kobayashi, K. , Kusakizako, T. , Nakagawa, R. , Nishimasu, H. , Nishizawa, T. , Nureki, O. , Okazaki, S. , Takeda, N.S. , Yamashita, K.

Primary Citation of Related Structures: 7C7L


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated protein Cas14a.1 A 539 Uncultured Archaeon , Synthetic Construct MGHHHHHHGSMAKNTITKTLKLRIVRPYNSAEVEKIVADEKNNREKIALEKNKDKVKEACSKHLKVAAYCTTQVERNACLFCKARKLDDKFYQKLRGQFPDAVFWQEISEIFRQLQKQAAEIYNQSLIELYYEIFIKGKGIANASSVEHYLSDVCYTRAAELFKNAAIASGLRSKIKSNFRLKELKNMKSGLPTTKSDNFPIPLVKQKGGQYTGFEISNHNSDFIIKIPFGRWQVKKEIDKYRPWEKFDFEQVQKSPKPISLLLSTQRRKRNKGWSKDEGTEAEIKKVMNGDYQTSYIEVKRGSKIGEKSAWMLNLSIDVPKIDKGVDPSIIGGIAVGVKSPLVCAINNAFSRYSISDNDLFHFNKKMFARRRILLKKNRHKRAGHGAKNKLKPITILTEKSERFRKKLIERWACEIADFFIKNKVGTVQMENLESMKRKEDSYFNIRLRGFWPYAEMQNKIEFKLKQYGIEIRKVAPNNTSKTCSKCGHLNNYFNFEYRKKNKFPHFKCEKCNFKENADYNAALNISNPKLKSTKEEP
CRISPR-associated protein Cas14a.1 B 539 Uncultured Archaeon , Synthetic Construct MGHHHHHHGSMAKNTITKTLKLRIVRPYNSAEVEKIVADEKNNREKIALEKNKDKVKEACSKHLKVAAYCTTQVERNACLFCKARKLDDKFYQKLRGQFPDAVFWQEISEIFRQLQKQAAEIYNQSLIELYYEIFIKGKGIANASSVEHYLSDVCYTRAAELFKNAAIASGLRSKIKSNFRLKELKNMKSGLPTTKSDNFPIPLVKQKGGQYTGFEISNHNSDFIIKIPFGRWQVKKEIDKYRPWEKFDFEQVQKSPKPISLLLSTQRRKRNKGWSKDEGTEAEIKKVMNGDYQTSYIEVKRGSKIGEKSAWMLNLSIDVPKIDKGVDPSIIGGIAVGVKSPLVCAINNAFSRYSISDNDLFHFNKKMFARRRILLKKNRHKRAGHGAKNKLKPITILTEKSERFRKKLIERWACEIADFFIKNKVGTVQMENLESMKRKEDSYFNIRLRGFWPYAEMQNKIEFKLKQYGIEIRKVAPNNTSKTCSKCGHLNNYFNFEYRKKNKFPHFKCEKCNFKENADYNAALNISNPKLKSTKEEP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
sgRNA c 180 NA UUCACUGAUAAAGUGGAGAACCGCUUCACCAAAAGCUGUCCCUUAGGGGAUUAGAACUUGAGUGAAGGUGGGCUGCUUGCAUCAGCCUAAUGUCGAGAAGUGCUUUCUUCGGAAAGUAACCCUCGAAACAAAUUCAUUUGAAAGAAUGAAGGAAUGCAACGGAAAUUAGGUGCGCUUGGC
DNA (40-mer) d 40 NA GAATGGTTGCCAAGCGCACCTAATTTCCCAAATTAGAAAA
DNA (40-mer) e 40 NA TTTTCTAATTTGGGAAATTAGGTGCGCTTGGCAACCATTC
Experimental Data

Method: ELECTRON MICROSCOPY