7C7L
Cryo-em structure of the cas12f1-sgrna-target dna complex
PDB DOI: 10.2210/pdb7c7l/pdb
Classification: RNA BINDING PROTEIN/RNA/DNA Organism(s): Uncultured Archaeon , Synthetic Construct
Deposited: 2020-05-26 Deposition Author(s): Hirano, H. , Kobayashi, K. , Kusakizako, T. , Nakagawa, R. , Nishimasu, H. , Nishizawa, T. , Nureki, O. , Okazaki, S. , Takeda, N.S. , Yamashita, K.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.3 Å
Cryo-em structure of the cas12f1-sgrna-target dna complex
Hirano, H. , Kobayashi, K. , Kusakizako, T. , Nakagawa, R. , Nishimasu, H. , Nishizawa, T. , Nureki, O. , Okazaki, S. , Takeda, N.S. , Yamashita, K.
Primary Citation of Related Structures: 7C7L
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CRISPR-associated protein Cas14a.1 | A | 539 | Uncultured Archaeon , Synthetic Construct | MGHHHHHHGSMAKNTITKTLKLRIVRPYNSAEVEKIVADEKNNREKIALEKNKDKVKEACSKHLKVAAYCTTQVERNACLFCKARKLDDKFYQKLRGQFPDAVFWQEISEIFRQLQKQAAEIYNQSLIELYYEIFIKGKGIANASSVEHYLSDVCYTRAAELFKNAAIASGLRSKIKSNFRLKELKNMKSGLPTTKSDNFPIPLVKQKGGQYTGFEISNHNSDFIIKIPFGRWQVKKEIDKYRPWEKFDFEQVQKSPKPISLLLSTQRRKRNKGWSKDEGTEAEIKKVMNGDYQTSYIEVKRGSKIGEKSAWMLNLSIDVPKIDKGVDPSIIGGIAVGVKSPLVCAINNAFSRYSISDNDLFHFNKKMFARRRILLKKNRHKRAGHGAKNKLKPITILTEKSERFRKKLIERWACEIADFFIKNKVGTVQMENLESMKRKEDSYFNIRLRGFWPYAEMQNKIEFKLKQYGIEIRKVAPNNTSKTCSKCGHLNNYFNFEYRKKNKFPHFKCEKCNFKENADYNAALNISNPKLKSTKEEP |
| CRISPR-associated protein Cas14a.1 | B | 539 | Uncultured Archaeon , Synthetic Construct | MGHHHHHHGSMAKNTITKTLKLRIVRPYNSAEVEKIVADEKNNREKIALEKNKDKVKEACSKHLKVAAYCTTQVERNACLFCKARKLDDKFYQKLRGQFPDAVFWQEISEIFRQLQKQAAEIYNQSLIELYYEIFIKGKGIANASSVEHYLSDVCYTRAAELFKNAAIASGLRSKIKSNFRLKELKNMKSGLPTTKSDNFPIPLVKQKGGQYTGFEISNHNSDFIIKIPFGRWQVKKEIDKYRPWEKFDFEQVQKSPKPISLLLSTQRRKRNKGWSKDEGTEAEIKKVMNGDYQTSYIEVKRGSKIGEKSAWMLNLSIDVPKIDKGVDPSIIGGIAVGVKSPLVCAINNAFSRYSISDNDLFHFNKKMFARRRILLKKNRHKRAGHGAKNKLKPITILTEKSERFRKKLIERWACEIADFFIKNKVGTVQMENLESMKRKEDSYFNIRLRGFWPYAEMQNKIEFKLKQYGIEIRKVAPNNTSKTCSKCGHLNNYFNFEYRKKNKFPHFKCEKCNFKENADYNAALNISNPKLKSTKEEP |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| sgRNA | c | 180 | NA | UUCACUGAUAAAGUGGAGAACCGCUUCACCAAAAGCUGUCCCUUAGGGGAUUAGAACUUGAGUGAAGGUGGGCUGCUUGCAUCAGCCUAAUGUCGAGAAGUGCUUUCUUCGGAAAGUAACCCUCGAAACAAAUUCAUUUGAAAGAAUGAAGGAAUGCAACGGAAAUUAGGUGCGCUUGGC |
| DNA (40-mer) | d | 40 | NA | GAATGGTTGCCAAGCGCACCTAATTTCCCAAATTAGAAAA |
| DNA (40-mer) | e | 40 | NA | TTTTCTAATTTGGGAAATTAGGTGCGCTTGGCAACCATTC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-05-26 Deposition Author(s): Hirano, H. , Kobayashi, K. , Kusakizako, T. , Nakagawa, R. , Nishimasu, H. , Nishizawa, T. , Nureki, O. , Okazaki, S. , Takeda, N.S. , Yamashita, K.