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FASTA Sequence PDB Format mmCIF Format
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7C08

Crystal structure of s34y mutant of yeast u2af1 complex bound to 3' splice site rna, 5'-uaggu.

PDB DOI: 10.2210/pdb7c08/pdb

Classification: SPLICING/RNA
Organism(s): Schizosaccharomyces Pombe 972H- , Synthetic Construct

Deposited: 2020-04-30
Deposition Author(s): Obayashi, E. , Park, S.Y. , Urano, T. , Yoshida, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.35 Å

Literature

Crystal structure of s34y mutant of yeast u2af1 complex bound to 3' splice site rna, 5'-uaggu.

Obayashi, E. , Park, S.Y. , Urano, T. , Yoshida, H.

Primary Citation of Related Structures: 7C08


Proteins
Molecule Chains Sequence Length Organism Sequence
Splicing factor U2AF 23 kDa subunit A 216 Schizosaccharomyces Pombe 972H- , Synthetic Construct MASHLASIYGTEQDKVNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAEEMKKEPNSDSTNRWVSVTAERKN
Splicing factor U2AF 23 kDa subunit D 216 Schizosaccharomyces Pombe 972H- , Synthetic Construct MASHLASIYGTEQDKVNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAEEMKKEPNSDSTNRWVSVTAERKN
Splicing factor U2AF 23 kDa subunit G 216 Schizosaccharomyces Pombe 972H- , Synthetic Construct MASHLASIYGTEQDKVNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAEEMKKEPNSDSTNRWVSVTAERKN
Splicing factor U2AF 23 kDa subunit J 216 Schizosaccharomyces Pombe 972H- , Synthetic Construct MASHLASIYGTEQDKVNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAEEMKKEPNSDSTNRWVSVTAERKN
Splicing factor U2AF 23 kDa subunit M 216 Schizosaccharomyces Pombe 972H- , Synthetic Construct MASHLASIYGTEQDKVNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAEEMKKEPNSDSTNRWVSVTAERKN
Splicing factor U2AF 23 kDa subunit P 216 Schizosaccharomyces Pombe 972H- , Synthetic Construct MASHLASIYGTEQDKVNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAEEMKKEPNSDSTNRWVSVTAERKN
Splicing factor U2AF 23 kDa subunit S 216 Schizosaccharomyces Pombe 972H- , Synthetic Construct MASHLASIYGTEQDKVNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAEEMKKEPNSDSTNRWVSVTAERKN
Splicing factor U2AF 23 kDa subunit V 216 Schizosaccharomyces Pombe 972H- , Synthetic Construct MASHLASIYGTEQDKVNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAEEMKKEPNSDSTNRWVSVTAERKN
Splicing factor U2AF 23 kDa subunit Y 216 Schizosaccharomyces Pombe 972H- , Synthetic Construct MASHLASIYGTEQDKVNCSFYYKIGACRHGERCYRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLLRDLVLAQRKYLALNAAEEMKKEPNSDSTNRWVSVTAERKN
Splicing factor U2AF 59 kDa subunit B 69 Schizosaccharomyces Pombe 972H- , Synthetic Construct SSVGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLPGA
Splicing factor U2AF 59 kDa subunit E 69 Schizosaccharomyces Pombe 972H- , Synthetic Construct SSVGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLPGA
Splicing factor U2AF 59 kDa subunit H 69 Schizosaccharomyces Pombe 972H- , Synthetic Construct SSVGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLPGA
Splicing factor U2AF 59 kDa subunit K 69 Schizosaccharomyces Pombe 972H- , Synthetic Construct SSVGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLPGA
Splicing factor U2AF 59 kDa subunit N 69 Schizosaccharomyces Pombe 972H- , Synthetic Construct SSVGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLPGA
Splicing factor U2AF 59 kDa subunit Q 69 Schizosaccharomyces Pombe 972H- , Synthetic Construct SSVGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLPGA
Splicing factor U2AF 59 kDa subunit T 69 Schizosaccharomyces Pombe 972H- , Synthetic Construct SSVGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLPGA
Splicing factor U2AF 59 kDa subunit W 69 Schizosaccharomyces Pombe 972H- , Synthetic Construct SSVGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLPGA
Splicing factor U2AF 59 kDa subunit Z 69 Schizosaccharomyces Pombe 972H- , Synthetic Construct SSVGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLWDIKPPGYELVTADQAKMSGVFPLPGA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(*U*UP*AP*GP*GP*U)-3') c 6 NA UUAGGU
RNA (5'-R(*U*UP*AP*GP*GP*U)-3') f 6 NA UUAGGU
RNA (5'-R(*U*UP*AP*GP*GP*U)-3') i 6 NA UUAGGU
RNA (5'-R(*U*UP*AP*GP*GP*U)-3') l 6 NA UUAGGU
RNA (5'-R(*U*UP*AP*GP*GP*U)-3') o 6 NA UUAGGU
RNA (5'-R(*U*UP*AP*GP*GP*U)-3') r 6 NA UUAGGU
RNA (5'-R(*U*UP*AP*GP*GP*U)-3') u 6 NA UUAGGU
RNA (5'-R(*U*UP*AP*GP*GP*U)-3') x 6 NA UUAGGU
RNA (5'-R(*U*UP*AP*GP*GP*U)-3') 1 6 NA UUAGGU
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-04-30
Deposition Author(s): Obayashi, E. , Park, S.Y. , Urano, T. , Yoshida, H.