Cryo-em structure of dengue virus serotype 2 complexed with fab sign-3c at ph 5.0
PDB DOI: 10.2210/pdb7bue/pdb
Classification: VIRUS Organism(s): Dengue Virus 2 , Homo Sapiens
Deposited: 2020-04-06 Deposition Author(s): Chew, S.V. , Kostyuchenko, V.A. , Lim, X.N. , Lok, S.M. , Ng, T.S. , Zhang, S.
Cryo-em structure of dengue virus serotype 2 complexed with fab sign-3c at ph 5.0
Chew, S.V. , Kostyuchenko, V.A. , Lim, X.N. , Lok, S.M. , Ng, T.S. , Zhang, S.
Primary Citation of Related Structures: 7BUE
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
SIgN-3C Fab heavy chain | G | 132 | Dengue Virus 2 , Homo Sapiens | EVQLVQSGPDVEKPGASVKVSCKASGYTFTSNYIHWVRQAPGQGLEWMGVINPRGGSTASAQKFQGRITMTRDTSTSTVYMELSSLRSDDTAVYYCARGGRALFYDSYTTPRDGGSWWFDPWGQGSLVTVSS |
SIgN-3C Fab heavy chain | H | 132 | Dengue Virus 2 , Homo Sapiens | EVQLVQSGPDVEKPGASVKVSCKASGYTFTSNYIHWVRQAPGQGLEWMGVINPRGGSTASAQKFQGRITMTRDTSTSTVYMELSSLRSDDTAVYYCARGGRALFYDSYTTPRDGGSWWFDPWGQGSLVTVSS |
SIgN-3C Fab heavy chain | J | 132 | Dengue Virus 2 , Homo Sapiens | EVQLVQSGPDVEKPGASVKVSCKASGYTFTSNYIHWVRQAPGQGLEWMGVINPRGGSTASAQKFQGRITMTRDTSTSTVYMELSSLRSDDTAVYYCARGGRALFYDSYTTPRDGGSWWFDPWGQGSLVTVSS |
SIgN-3C Fab light chain | I | 107 | Dengue Virus 2 , Homo Sapiens | DIQLTQSPSSLSASVGDRVTFTCQASQDIRKYLNWYQQKPGKAPKLLIYDASNLKTGVPSRFSGSGSGTDFTFTISSLQPEDVATYYCQQFDDLPITFGQGTRLQIK |
SIgN-3C Fab light chain | L | 107 | Dengue Virus 2 , Homo Sapiens | DIQLTQSPSSLSASVGDRVTFTCQASQDIRKYLNWYQQKPGKAPKLLIYDASNLKTGVPSRFSGSGSGTDFTFTISSLQPEDVATYYCQQFDDLPITFGQGTRLQIK |
SIgN-3C Fab light chain | K | 107 | Dengue Virus 2 , Homo Sapiens | DIQLTQSPSSLSASVGDRVTFTCQASQDIRKYLNWYQQKPGKAPKLLIYDASNLKTGVPSRFSGSGSGTDFTFTISSLQPEDVATYYCQQFDDLPITFGQGTRLQIK |
Dengue serotype 2 E protein ectodomain | B | 394 | Dengue Virus 2 , Homo Sapiens | MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKHPATLRKYCVEAKLTNTTTASRCPTQGEPSLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKVVQPENLEYTIVITPHSGEENAVGNDTGKHGKEIKVTPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMENKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLSWFKK |
Dengue serotype 2 E protein ectodomain | A | 394 | Dengue Virus 2 , Homo Sapiens | MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKHPATLRKYCVEAKLTNTTTASRCPTQGEPSLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKVVQPENLEYTIVITPHSGEENAVGNDTGKHGKEIKVTPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMENKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLSWFKK |
Dengue serotype 2 E protein ectodomain | C | 394 | Dengue Virus 2 , Homo Sapiens | MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKHPATLRKYCVEAKLTNTTTASRCPTQGEPSLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKVVQPENLEYTIVITPHSGEENAVGNDTGKHGKEIKVTPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMENKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLSWFKK |
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-04-06 Deposition Author(s): Chew, S.V. , Kostyuchenko, V.A. , Lim, X.N. , Lok, S.M. , Ng, T.S. , Zhang, S.