PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7B3C

Structure of elongating sars-cov-2 rna-dependent rna polymerase with remdesivir at position -4 (structure 2)

PDB DOI: 10.2210/pdb7b3c/pdb

Classification: VIRAL PROTEIN
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct

Deposited: 2020-11-30
Deposition Author(s): Cramer, P. , Dienemann, C. , Farnung, L. , Hillen, H.S. , Hoebartner, C. , Kokic, G. , Schmitzova, J. , Seitz, F. , Siewert, A. , Tegunov, D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Literature

Structure of elongating sars-cov-2 rna-dependent rna polymerase with remdesivir at position -4 (structure 2)

Cramer, P. , Dienemann, C. , Farnung, L. , Hillen, H.S. , Hoebartner, C. , Kokic, G. , Schmitzova, J. , Seitz, F. , Siewert, A. , Tegunov, D.

Primary Citation of Related Structures: 7B3C


Proteins
Molecule Chains Sequence Length Organism Sequence
RNA-directed RNA polymerase nsp12 A 935 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct SNASADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ
Non-structural protein 8 B 201 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct SNAAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ
Non-structural protein 7 C 86 Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct SNASKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA/RNA (5'-R(P*CP*UP*AP*CP*GP*CP*A)-D(P*(RMP))-R(P*GP*UP*G)-3') p 15 NA UGAGCCUACGCXGUG
RNA (5'-R(P*UP*CP*AP*CP*UP*UP*GP*CP*GP*UP*AP*G)-3') t 57 NA UUUUCAUGCACUGCGUAGGCUCAUACCGUAUUGAGACCUUUUGGUCUCAAUACGGUA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-11-30
Deposition Author(s): Cramer, P. , Dienemann, C. , Farnung, L. , Hillen, H.S. , Hoebartner, C. , Kokic, G. , Schmitzova, J. , Seitz, F. , Siewert, A. , Tegunov, D.