7B0N
A 3.7-angstrom structure of yarrowia lipolytica complex i with an r121m mutation in nucm.
PDB DOI: 10.2210/pdb7b0n/pdb
Classification: MEMBRANE PROTEIN Organism(s): Yarrowia Lipolytica
Deposited: 2020-11-20 Deposition Author(s): Grba, D. , Hirst, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.7 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 | A | 86 | Yarrowia Lipolytica | AIPFEALLPYGIIFGLLTAGGGAMQVLHVYRNGGVRDRFAIDQWDSQMMERDLRLNGGQGRKQVDQATAPEAFKHNHVWKSERPLI |
| Subunit NUVM of NADH:Ubiquinone Oxidoreductase (Complex I) | J | 67 | Yarrowia Lipolytica | MAGHHTNYKWNGPLPRPHVSAGHRIATKFLGATMFFWMFLRIKEEYPAMLGLHNFYPPKEGEKAVEH |
| Subunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I) | K | 60 | Yarrowia Lipolytica | MAPQLKDPWARREAWRYQTNFTRANRFKGAAPGFGIAVVAFGAYLAAEKFLFEKKDDHHH |
| Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I) | L | 149 | Yarrowia Lipolytica | MLSRRAVTMLRSPVARVAQVQVRGIRASFDKAEEPMLGDYPDIDPFPAQLKNPYKKYDDQQDRRNLEEPLSVNDDLYDMWSPDRFTHFKNQDALKYFIGFLTIFFGASYVATYFVPEKAAIPREFPYEGLWKESGGTEKSKAFFGQRSE |
| Subunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I) | M | 93 | Yarrowia Lipolytica | MVELKPSSAIQRGPLNKGGWDAPHALHNDGAIDRYAHWRTFYQERFKYTRATGKSTLIFLVAFPALIGYVAYQSEGLFEFAGKRRGESVTTRG |
| Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I) | N | 109 | Yarrowia Lipolytica | MSHPVPFSAANKKLVTSMYRQSLKLARNWISNRQLFRQKAVEIRHKFDQNAQISNPRLLARTLDETRAHLYEFRHPDPIVPPSFPGGTKYERNVPPRMEKIMQHNLYEP |
| Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I) | O | 99 | Yarrowia Lipolytica | MAEFPPLLSQEDMKKHKILLAYRDRCAALLVPLNECRKKNYYMPWACGHERHEYEMCEVADFQRRVKAMDKLKAEKIEQAKAAAAAAAAAAAADAEESK |
| Subunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I) | P | 92 | Yarrowia Lipolytica | MSEHQRPELVSFDDINYNDHKKVREAQESYTREQFIRLEALKTVRKALEKCYEESGPNHFEDCKNLAEQYLDMLPTHRLQGYLGYQRNDPSK |
| Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I) | Q | 161 | Yarrowia Lipolytica | MLSRSLRQLSQPSVRSFATSARLLQKKDVPEVGVNLDNVPAHEIVSGAPAELSRNRVVRIYQQAKPATQSGEYGTFAWRLDWDIVDVANRWENDLIGWQSSGDYMQATQMKFTSKESAIKFANKQGWDFYIQEPHHRKFRVKQYANNFVHSYGKLKHIRTK |
| zf-CHCC domain-containing protein | R | 118 | Yarrowia Lipolytica | KSIISYNGNTIEIPEEYTKQAPNRDSTWAPAQASKTEIYKNNMVRFEQKDLSKQPMPYAGIELIAQQPVRFVHGNTAVCDGANHNGPGAQGHPKIFINVDAPGSHACQYCGTRYEKEH |
| Subunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I) | S | 87 | Yarrowia Lipolytica | MSAALREIRFHLCQNGSSSAPLRQFVKNQIGAFQKANPSTKVLVREANGVKPIVFARFDHGHESKIGLDVSSEKEVAERVKSLIEAK |
| subunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I) | B | 78 | Yarrowia Lipolytica | MINANPGFWNGPFRYLRWSAHNRPHLFFAFAIGIAGPVAALTLTPLRRKYLYPDHSPLPQSYPLPQRAREQLTGFDDE |
| Acyl carrier protein | T | 81 | Yarrowia Lipolytica | RPDAEKRIAAVLESFDKISNPAAITPTASFAKDLNLDSLDTVEVVVAIEEEFGIEIPDKEADEIKSVNQAVEYILAQPDAK |
| Acyl carrier protein | U | 88 | Yarrowia Lipolytica | SSAHVLTKDMIQERIVALLESFDKVNDAKNITATANLTSDLGLDSLDVVEVVMAIEEEFGLEIPDHDADEIKTVQQAIDYVSAQPAAV |
| Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I) | V | 144 | Yarrowia Lipolytica | MRYTQLLRNVSKGVQKSGQSVLVQMREGTPIGLTGIYQHPNPRPALIALYEATLKELQDKHPKDSVYRQSIENLTAHRKQIVEDNEVSEVIENKIGAGLIEEVVIQAHEELELAKKMSEWKPWEELEEKPLEDQWVYFNKKGVE |
| Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I) | W | 124 | Yarrowia Lipolytica | MAIIATAFAETVKFSGSKQELQKRTLALYRQFLRGAPTFADLYEVQFSIPTIRTKIRQEFERHRFVDDLSIQNVLYAKGHMEYQECINFWKQQAQFLKYFPEEDDIQGRHQPSNFVDKFLKNRA |
| Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I) | X | 172 | Yarrowia Lipolytica | MPREAAAHWVPFEDKANMPDNVPDVVEVGATSAPLLSASYFIGAKCKPYNDDFMLCREESQGSGAIDCLKEGRRVTRCAVSVIEDINKSCLDEFRLHWQCLEQNNHQLSGCRKAEALLNKCVFTKLNLEKKIPGLRPDEEPVFLKKDPWIKPAVDDFKSVRAYAEAKKNGTL |
| Complex I-B14.7 | Y | 180 | Yarrowia Lipolytica | HFHPYNTLGLATQSAMVGLGAGVVAAAARNSLATGPRNILTTFSKSGGVVTIFTGASIAYVFTYCSAANLRERKDGWNHMWAGAATGAVLGARTKLVPAFIGWTVLCGAACGLFGWTGARFNADRKASLEQSPKGFVQEDAHQTFWEVVHRRPLSLTVEQLGEGRGINAVPIATATEAPN |
| GRIM-19 | Z | 122 | Yarrowia Lipolytica | PSVGQDLPPVGGYEPVQWRRNLPARGFRPLVYLAALCGICGYGFYRALGGIQERRELKREKLWARIYLMPLLQAEEDRQTVRRSIAQLEREKEIMKGTGFDVDKSVYNDGKFHAPALMIPPK |
| NUGM protein | C | 293 | Yarrowia Lipolytica | MLSRFARIGSMGIRPVAAARATFVTSARAAQAAPSWENIKDIRLDPKVHVDEVYEPIVNPADRYLQHVSDLHQYAKYIMAALPKYIQGFSVWKDELTLHVAPSAVIPVTTFLRDNTSTQYKSIIDITAVDYPSRENRFEVVYNFLSVRHNSRIRLKTYATEVTPVPSITCLYEGANWFEREAYDMYGVFFEGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEVRWDEEKRRVVYEPLELTQAFRNFSAGSTAWEPVGPGRDDRPDSFKLPTPKPEEKEGDKKAAAAAAHHHHHH |
| NUCM protein | D | 466 | Yarrowia Lipolytica | MLRSAAARAVRAVRPRLSARYMATTALPQDPIPSGALGQKVPHVDESHQDLLFRTSHMVEDLETYDEDSPINTSDANTRIRAFTINFGPQHPAAHGVLRLILELSGEEIIRSDPHVGLLHMGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQVFSLAVEKLLNVEVPLRGKYIRTMFGEITRVLNHLMSVCSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPAGLLDDIYMWATQFGDRLDEIEELLTDNRIWKLRTVNIGTVTAQDALNLGLSGPMLRGSGIPFDIRKNAPYDAYDKVDFDVPVGMNGDCYDRYLIRMAEFRQSLRIIEQCCNDMPAGAVKVEDFKINSPPRNLMKEDMEALIHHFLLYTKGYSVPPGETYTAIEAPKGEMGVYVVSDGSERPYKCKIRAPGFAHLGAFDHIARGHFLPDAVAIIGTMDLVFGEVDR |
| Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I) | E | 243 | Yarrowia Lipolytica | MLRLIRPRLAALARPTTRAPQALNARTHIVSVHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLGYTSISVMNYVAKLLEMPPMRVYEVATFYTMYNRTPMGRYHLQICTTTPCQLCGSDGIMEAVQNTLNIKPGETTKDNLFTLSEVECLGACVNAPMMAINDDYYEDLTPEGTVKLLEDCKAGKMPTPGPENHVRRDCEPASGQKVLLSKEPHNVADFLQEGI |
| Subunit NUBM of NADH:Ubiquinone Oxidoreductase (Complex I) | F | 488 | Yarrowia Lipolytica | MLRTTLHKRGLARLSRGFATTQDATPKARQYGGLKDQDRIFQNLYDNYGWDLASARKQGDWYKTKELILKGDTWIIDEIKKSGLRGRGGAGFPSGLKWSFMNPPGWEKNEGPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLLAGRAMNATAAYIYIRGEFYNEAAVLQTAINEAYAAGLIGKDACGSGYDFDVYIHRGMGAYVCGEETSLIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRERNSGTKLFCISGNVNEPCTVEEEMSIPLRELLEKHCGGIKGGWDNLLGVIPGGCSVPILPKNICEDVLMDFDALKDVQSGLGTAAVIVINKQQDVIRAIQRFAAFYKHESCGQCTPCREGTTWLLKAMDRFRTGQAKEREIDMLYELTKDIEGHTICALGDAAAWPIQGLIRNFRPEMETRMKKFHDEVGAVSVGGWMKDARVEKGKVVGAPLPGVHH |
| Subunit NUAM of NADH:Ubiquinone Oxidoreductase (Complex I) | G | 728 | Yarrowia Lipolytica | MLSRNLSKFARAGLIRPATTSTHTRLFSVSARRLAEIELTIDGHKVSIEAGSALIQACEKAGVTVPRYCYHDKLAIAGNCRMCLVDVERAPKPVASCAYPVAPGMVVRTDTERVKQARENVMEMMLQNHPLDCPVCDQGGECDLQDQSMRYGRDRGRFTEITGKRSTEDKNIGPLVKTSMNRCIHCTRCVRFANDIAGAPELGSSGRGNDMQIGTYLEKNLNTELSGNVIDLCPVGALTNKPYAFRARPWELKKTESIDVMDAVGSNIRIDSKGVEVMRVIPRVHEDVNEEWINDKSRFACDGLKTQRLTTPLIRVGDKFVNATWDDALSTIAKAYQQKAPKGDEFKAVAGALVEVESMVALKDMTNALGSENTTTDTPNGNSAPAHGITFRSNYLFNSSIAGIEDADAILLVGTNPRREAAVMNARIRKAWLRQELEIASVGPTLDATFDVAELGNTHADLEKALSGEFGEVLKNAKNPLIIVGSGITDREDAGAFFNTIGKFVESTPSVLNENWNGYNVLQRSASRAGAYDIGFTPSDEASKTTPKMVWLLGADEVAASDIPADAFVVYQGHNGDVGAQFADVVLPGAAYTEKAGTYVNTEGRSQISRAATGPPGGAREDWKILRAVSEYLGVALPYEDAYEVRDRLAEISPSLVRYDLVEPTVFGDVAVQHSLVGPNGSVTPSSAPLTETIENFYMTDSISRSSPTMAKSSIAFNKDNKKNQAFA |
| NADH-ubiquinone oxidoreductase chain 1 | H | 341 | Yarrowia Lipolytica | MIINIVEILIFLVCVLFSVAYLTVAERKTLAYMQRRLGPNFVGYYGLLQAFADAVKLLLKEIVLPKESNYIILVISPLITLITALIGWVVIPLGPGITLGELNLGILFSLAIGSLGVFGSLLSGWSSNSKYSLLGSIRSTAQLISYELILTSIFIIIIMFVSSLNITTIIETQRVVWYCIPLLPLLLIFFIASVAETARPPFDLTESESELVAGYFTEYSGSPFVFFFLAEYSNIILISAFNGYLLLGGYLSFNYSYLFNILFNDYSYVSFLFEGLINSSAYAIKLVFLMFSFIWVRAAFPRFTYDNLINFCWIILLPLLFGIFLIIPSTLYIFDSFPTLI |
| Subunit NUIM of protein NADH:Ubiquinone Oxidoreductase (Complex I) | I | 193 | Yarrowia Lipolytica | SAINIYAGGSAAAAPPAGFRIHRPATWEESEEGALSKATKYFLLAEMFRGLYVVLEQFFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERCIACKLCEAICPALAITIDAEERIDGSRRTTKYDIDMTKCIYCGYCQESCPVDAIVETPNVEYATETREELLYNKEKLLANGDKWELELQYALDADAPYR |
Experimental Data
Method: ELECTRON MICROSCOPY