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FASTA Sequence PDB Format mmCIF Format
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7AYG

Oxalyl-coa decarboxylase from methylorubrum extorquens with bound tpp and adp

PDB DOI: 10.2210/pdb7ayg/pdb

Classification: LYASE
Organism(s): Methylorubrum Extorquens Am1

Deposited: 2020-11-12
Deposition Author(s): Burgener, S. , Erb, T.J. , Nattermann, M. , Pfister, P. , Zarzycki, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.9 Å

7ayg
Literature

Oxalyl-coa decarboxylase from methylorubrum extorquens with bound tpp and adp

Burgener, S. , Erb, T.J. , Nattermann, M. , Pfister, P. , Zarzycki, J.

Primary Citation of Related Structures: 7AYG


Proteins
Molecule Chains Sequence Length Organism Sequence
Putative oxalyl-CoA decarboxylase (Oxc, yfdU) A 583 Methylorubrum Extorquens Am1 MTVQAQNIDAITAGAMPHEEPELTDGFHLVIDALKLNGIETIYNVPGIPITDLGRLAQAEGLRVISFRHEQNAGNAAAIAGFLTKKPGICLTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGDYEEMDQLAIAKPLCKAAFRVLHAADIGIGVARAIRAAVSGRPGGVYLDLPAKLFSQVIDADLGARSLVKVIDAAPAQLPAPAAIARALDVLKSAERPLIILGKGAAYAQADEAVRALVEESGIPYVPMSMAKGLLPDTHPLSAGAARSTALKDSDVVLLVGARLNWLLSHGKGKTWGEPGSKRFIQIDIEPREMDSNVEIVAPVVGDIGSCVEALLDGIRKDWKGAPSNWLETLRGKREANIAKMAPKLMKNSSPMCFHSALGALRTVIKERPDAILVNEGANTLDLARGIIDMYQPRKRLDVGTWGVMGIGMGFAVAAAVETGKPVLAVEGDSAFGFSGMEVETICRYELPVCIVIFNNNGIYRGTDTDPTGRDPGTTVFVKNSRYDKMMEAFGGVGVNVTTPDELKRAVDEAMNSGKPTLINAEIDPAAGSESGNIGSLNPQSTLKKK
Putative oxalyl-CoA decarboxylase (Oxc, yfdU) B 583 Methylorubrum Extorquens Am1 MTVQAQNIDAITAGAMPHEEPELTDGFHLVIDALKLNGIETIYNVPGIPITDLGRLAQAEGLRVISFRHEQNAGNAAAIAGFLTKKPGICLTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGDYEEMDQLAIAKPLCKAAFRVLHAADIGIGVARAIRAAVSGRPGGVYLDLPAKLFSQVIDADLGARSLVKVIDAAPAQLPAPAAIARALDVLKSAERPLIILGKGAAYAQADEAVRALVEESGIPYVPMSMAKGLLPDTHPLSAGAARSTALKDSDVVLLVGARLNWLLSHGKGKTWGEPGSKRFIQIDIEPREMDSNVEIVAPVVGDIGSCVEALLDGIRKDWKGAPSNWLETLRGKREANIAKMAPKLMKNSSPMCFHSALGALRTVIKERPDAILVNEGANTLDLARGIIDMYQPRKRLDVGTWGVMGIGMGFAVAAAVETGKPVLAVEGDSAFGFSGMEVETICRYELPVCIVIFNNNGIYRGTDTDPTGRDPGTTVFVKNSRYDKMMEAFGGVGVNVTTPDELKRAVDEAMNSGKPTLINAEIDPAAGSESGNIGSLNPQSTLKKK
Putative oxalyl-CoA decarboxylase (Oxc, yfdU) C 583 Methylorubrum Extorquens Am1 MTVQAQNIDAITAGAMPHEEPELTDGFHLVIDALKLNGIETIYNVPGIPITDLGRLAQAEGLRVISFRHEQNAGNAAAIAGFLTKKPGICLTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGDYEEMDQLAIAKPLCKAAFRVLHAADIGIGVARAIRAAVSGRPGGVYLDLPAKLFSQVIDADLGARSLVKVIDAAPAQLPAPAAIARALDVLKSAERPLIILGKGAAYAQADEAVRALVEESGIPYVPMSMAKGLLPDTHPLSAGAARSTALKDSDVVLLVGARLNWLLSHGKGKTWGEPGSKRFIQIDIEPREMDSNVEIVAPVVGDIGSCVEALLDGIRKDWKGAPSNWLETLRGKREANIAKMAPKLMKNSSPMCFHSALGALRTVIKERPDAILVNEGANTLDLARGIIDMYQPRKRLDVGTWGVMGIGMGFAVAAAVETGKPVLAVEGDSAFGFSGMEVETICRYELPVCIVIFNNNGIYRGTDTDPTGRDPGTTVFVKNSRYDKMMEAFGGVGVNVTTPDELKRAVDEAMNSGKPTLINAEIDPAAGSESGNIGSLNPQSTLKKK
Putative oxalyl-CoA decarboxylase (Oxc, yfdU) D 583 Methylorubrum Extorquens Am1 MTVQAQNIDAITAGAMPHEEPELTDGFHLVIDALKLNGIETIYNVPGIPITDLGRLAQAEGLRVISFRHEQNAGNAAAIAGFLTKKPGICLTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGDYEEMDQLAIAKPLCKAAFRVLHAADIGIGVARAIRAAVSGRPGGVYLDLPAKLFSQVIDADLGARSLVKVIDAAPAQLPAPAAIARALDVLKSAERPLIILGKGAAYAQADEAVRALVEESGIPYVPMSMAKGLLPDTHPLSAGAARSTALKDSDVVLLVGARLNWLLSHGKGKTWGEPGSKRFIQIDIEPREMDSNVEIVAPVVGDIGSCVEALLDGIRKDWKGAPSNWLETLRGKREANIAKMAPKLMKNSSPMCFHSALGALRTVIKERPDAILVNEGANTLDLARGIIDMYQPRKRLDVGTWGVMGIGMGFAVAAAVETGKPVLAVEGDSAFGFSGMEVETICRYELPVCIVIFNNNGIYRGTDTDPTGRDPGTTVFVKNSRYDKMMEAFGGVGVNVTTPDELKRAVDEAMNSGKPTLINAEIDPAAGSESGNIGSLNPQSTLKKK
Putative oxalyl-CoA decarboxylase (Oxc, yfdU) E 583 Methylorubrum Extorquens Am1 MTVQAQNIDAITAGAMPHEEPELTDGFHLVIDALKLNGIETIYNVPGIPITDLGRLAQAEGLRVISFRHEQNAGNAAAIAGFLTKKPGICLTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGDYEEMDQLAIAKPLCKAAFRVLHAADIGIGVARAIRAAVSGRPGGVYLDLPAKLFSQVIDADLGARSLVKVIDAAPAQLPAPAAIARALDVLKSAERPLIILGKGAAYAQADEAVRALVEESGIPYVPMSMAKGLLPDTHPLSAGAARSTALKDSDVVLLVGARLNWLLSHGKGKTWGEPGSKRFIQIDIEPREMDSNVEIVAPVVGDIGSCVEALLDGIRKDWKGAPSNWLETLRGKREANIAKMAPKLMKNSSPMCFHSALGALRTVIKERPDAILVNEGANTLDLARGIIDMYQPRKRLDVGTWGVMGIGMGFAVAAAVETGKPVLAVEGDSAFGFSGMEVETICRYELPVCIVIFNNNGIYRGTDTDPTGRDPGTTVFVKNSRYDKMMEAFGGVGVNVTTPDELKRAVDEAMNSGKPTLINAEIDPAAGSESGNIGSLNPQSTLKKK
Putative oxalyl-CoA decarboxylase (Oxc, yfdU) F 583 Methylorubrum Extorquens Am1 MTVQAQNIDAITAGAMPHEEPELTDGFHLVIDALKLNGIETIYNVPGIPITDLGRLAQAEGLRVISFRHEQNAGNAAAIAGFLTKKPGICLTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGDYEEMDQLAIAKPLCKAAFRVLHAADIGIGVARAIRAAVSGRPGGVYLDLPAKLFSQVIDADLGARSLVKVIDAAPAQLPAPAAIARALDVLKSAERPLIILGKGAAYAQADEAVRALVEESGIPYVPMSMAKGLLPDTHPLSAGAARSTALKDSDVVLLVGARLNWLLSHGKGKTWGEPGSKRFIQIDIEPREMDSNVEIVAPVVGDIGSCVEALLDGIRKDWKGAPSNWLETLRGKREANIAKMAPKLMKNSSPMCFHSALGALRTVIKERPDAILVNEGANTLDLARGIIDMYQPRKRLDVGTWGVMGIGMGFAVAAAVETGKPVLAVEGDSAFGFSGMEVETICRYELPVCIVIFNNNGIYRGTDTDPTGRDPGTTVFVKNSRYDKMMEAFGGVGVNVTTPDELKRAVDEAMNSGKPTLINAEIDPAAGSESGNIGSLNPQSTLKKK
Putative oxalyl-CoA decarboxylase (Oxc, yfdU) G 583 Methylorubrum Extorquens Am1 MTVQAQNIDAITAGAMPHEEPELTDGFHLVIDALKLNGIETIYNVPGIPITDLGRLAQAEGLRVISFRHEQNAGNAAAIAGFLTKKPGICLTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGDYEEMDQLAIAKPLCKAAFRVLHAADIGIGVARAIRAAVSGRPGGVYLDLPAKLFSQVIDADLGARSLVKVIDAAPAQLPAPAAIARALDVLKSAERPLIILGKGAAYAQADEAVRALVEESGIPYVPMSMAKGLLPDTHPLSAGAARSTALKDSDVVLLVGARLNWLLSHGKGKTWGEPGSKRFIQIDIEPREMDSNVEIVAPVVGDIGSCVEALLDGIRKDWKGAPSNWLETLRGKREANIAKMAPKLMKNSSPMCFHSALGALRTVIKERPDAILVNEGANTLDLARGIIDMYQPRKRLDVGTWGVMGIGMGFAVAAAVETGKPVLAVEGDSAFGFSGMEVETICRYELPVCIVIFNNNGIYRGTDTDPTGRDPGTTVFVKNSRYDKMMEAFGGVGVNVTTPDELKRAVDEAMNSGKPTLINAEIDPAAGSESGNIGSLNPQSTLKKK
Putative oxalyl-CoA decarboxylase (Oxc, yfdU) H 583 Methylorubrum Extorquens Am1 MTVQAQNIDAITAGAMPHEEPELTDGFHLVIDALKLNGIETIYNVPGIPITDLGRLAQAEGLRVISFRHEQNAGNAAAIAGFLTKKPGICLTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGDYEEMDQLAIAKPLCKAAFRVLHAADIGIGVARAIRAAVSGRPGGVYLDLPAKLFSQVIDADLGARSLVKVIDAAPAQLPAPAAIARALDVLKSAERPLIILGKGAAYAQADEAVRALVEESGIPYVPMSMAKGLLPDTHPLSAGAARSTALKDSDVVLLVGARLNWLLSHGKGKTWGEPGSKRFIQIDIEPREMDSNVEIVAPVVGDIGSCVEALLDGIRKDWKGAPSNWLETLRGKREANIAKMAPKLMKNSSPMCFHSALGALRTVIKERPDAILVNEGANTLDLARGIIDMYQPRKRLDVGTWGVMGIGMGFAVAAAVETGKPVLAVEGDSAFGFSGMEVETICRYELPVCIVIFNNNGIYRGTDTDPTGRDPGTTVFVKNSRYDKMMEAFGGVGVNVTTPDELKRAVDEAMNSGKPTLINAEIDPAAGSESGNIGSLNPQSTLKKK
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-11-12
Deposition Author(s): Burgener, S. , Erb, T.J. , Nattermann, M. , Pfister, P. , Zarzycki, J.