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FASTA Sequence PDB Format mmCIF Format
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7AEF

Cryo-em structure of an extracellular contractile injection system in marine bacterium algoriphagus machipongonensis, the baseplate complex in extended state applied 3-fold symmetry.

PDB DOI: 10.2210/pdb7aef/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Algoriphagus Machipongonensis

Deposited: 2020-09-17
Deposition Author(s): Ericson, C. , Feldmueller, M. , Lien, Y.W. , Pilhofer, M. , Xu, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

7aef
Literature

Cryo-em structure of an extracellular contractile injection system in marine bacterium algoriphagus machipongonensis, the baseplate complex in extended state applied 3-fold symmetry.

Ericson, C. , Feldmueller, M. , Lien, Y.W. , Pilhofer, M. , Xu, J.

Primary Citation of Related Structures: 7AEF


Proteins
Molecule Chains Sequence Length Organism Sequence
Phospholipid/glycerol acyltransferase A 147 Algoriphagus Machipongonensis MATYYPPSSFHFLVEFTGIDAKNNDHEFQSVSGLSVDIDTEEFAEGGENRFKHKFPVKTKYPNLVLKRGVLVDSKVISWCRDAIEDFEFKPIDLTVKLLNEEHQPLMTWNVVHAYPVKWSVEDFNAQESKMAIESVELSYNYFKTIV
Phospholipid/glycerol acyltransferase B 147 Algoriphagus Machipongonensis MATYYPPSSFHFLVEFTGIDAKNNDHEFQSVSGLSVDIDTEEFAEGGENRFKHKFPVKTKYPNLVLKRGVLVDSKVISWCRDAIEDFEFKPIDLTVKLLNEEHQPLMTWNVVHAYPVKWSVEDFNAQESKMAIESVELSYNYFKTIV
Phospholipid/glycerol acyltransferase C 147 Algoriphagus Machipongonensis MATYYPPSSFHFLVEFTGIDAKNNDHEFQSVSGLSVDIDTEEFAEGGENRFKHKFPVKTKYPNLVLKRGVLVDSKVISWCRDAIEDFEFKPIDLTVKLLNEEHQPLMTWNVVHAYPVKWSVEDFNAQESKMAIESVELSYNYFKTIV
Phospholipid/glycerol acyltransferase D 147 Algoriphagus Machipongonensis MATYYPPSSFHFLVEFTGIDAKNNDHEFQSVSGLSVDIDTEEFAEGGENRFKHKFPVKTKYPNLVLKRGVLVDSKVISWCRDAIEDFEFKPIDLTVKLLNEEHQPLMTWNVVHAYPVKWSVEDFNAQESKMAIESVELSYNYFKTIV
Putative phage tail sheath protein FI E 692 Algoriphagus Machipongonensis MATYKTPGVYIEEITKFPPSVAQVETAIPAFIGYTQFARTKPSVDSDDLILKPKRISSLLDFTTYYGGAQNEQGITVKLTDTLIEGAENRTINVPEPTFKSPYLMFYSLQMYFANGGGPCYIVSTGVYDDWSDSETPPTINFSDLESGLAVIRKEDEPTLLLFPDATNLPTDDEFYSLYNSALMQCNDLQDRFTILDTYSDQTYNDGVEDLDPIPALRNGINLTKDYLKYGAAYYPFVQTILNYQYSADEIVIQHLSYNPNAIATALDNLNAVNGPTFIDAILDDLRDLSLPDISGEISDAVGFMYDDVDGFDIDGTFTTNSVKVANFASLVESVLSTLNELIDAKEEINKDVNSAIASSEEDNAIKTAISDALDVFNEDFEGADKIESVAKNLSDLLIKIKQADTNTKVENVLSINALNFSAEFEKLLTYDVNTGLTASVTLDLFANIGTRLDDIIAAVSAAEPIDVNNGKLNGRLLSDIEPLDNATYNTILLEINSHKVTLPPSSSMAGAYARVDNDRGVWKSPANIGLNYVSKPSVTVSHEEQESMNVHGTGKSVNAIRSFVGKGTLVWGARTLAGNDNEWRYISVRRFFNMAEESIKKATEQFVFEPNDGNTWVRVRAMIENFLILQWRAGALAGAKPEHAFYVKVGLGQTMTAQDILEGNMNVEIGLAVVRPAEFIILKFSHKMQES
Putative phage tail sheath protein FI F 692 Algoriphagus Machipongonensis MATYKTPGVYIEEITKFPPSVAQVETAIPAFIGYTQFARTKPSVDSDDLILKPKRISSLLDFTTYYGGAQNEQGITVKLTDTLIEGAENRTINVPEPTFKSPYLMFYSLQMYFANGGGPCYIVSTGVYDDWSDSETPPTINFSDLESGLAVIRKEDEPTLLLFPDATNLPTDDEFYSLYNSALMQCNDLQDRFTILDTYSDQTYNDGVEDLDPIPALRNGINLTKDYLKYGAAYYPFVQTILNYQYSADEIVIQHLSYNPNAIATALDNLNAVNGPTFIDAILDDLRDLSLPDISGEISDAVGFMYDDVDGFDIDGTFTTNSVKVANFASLVESVLSTLNELIDAKEEINKDVNSAIASSEEDNAIKTAISDALDVFNEDFEGADKIESVAKNLSDLLIKIKQADTNTKVENVLSINALNFSAEFEKLLTYDVNTGLTASVTLDLFANIGTRLDDIIAAVSAAEPIDVNNGKLNGRLLSDIEPLDNATYNTILLEINSHKVTLPPSSSMAGAYARVDNDRGVWKSPANIGLNYVSKPSVTVSHEEQESMNVHGTGKSVNAIRSFVGKGTLVWGARTLAGNDNEWRYISVRRFFNMAEESIKKATEQFVFEPNDGNTWVRVRAMIENFLILQWRAGALAGAKPEHAFYVKVGLGQTMTAQDILEGNMNVEIGLAVVRPAEFIILKFSHKMQES
Putative phage tail sheath protein FI G 692 Algoriphagus Machipongonensis MATYKTPGVYIEEITKFPPSVAQVETAIPAFIGYTQFARTKPSVDSDDLILKPKRISSLLDFTTYYGGAQNEQGITVKLTDTLIEGAENRTINVPEPTFKSPYLMFYSLQMYFANGGGPCYIVSTGVYDDWSDSETPPTINFSDLESGLAVIRKEDEPTLLLFPDATNLPTDDEFYSLYNSALMQCNDLQDRFTILDTYSDQTYNDGVEDLDPIPALRNGINLTKDYLKYGAAYYPFVQTILNYQYSADEIVIQHLSYNPNAIATALDNLNAVNGPTFIDAILDDLRDLSLPDISGEISDAVGFMYDDVDGFDIDGTFTTNSVKVANFASLVESVLSTLNELIDAKEEINKDVNSAIASSEEDNAIKTAISDALDVFNEDFEGADKIESVAKNLSDLLIKIKQADTNTKVENVLSINALNFSAEFEKLLTYDVNTGLTASVTLDLFANIGTRLDDIIAAVSAAEPIDVNNGKLNGRLLSDIEPLDNATYNTILLEINSHKVTLPPSSSMAGAYARVDNDRGVWKSPANIGLNYVSKPSVTVSHEEQESMNVHGTGKSVNAIRSFVGKGTLVWGARTLAGNDNEWRYISVRRFFNMAEESIKKATEQFVFEPNDGNTWVRVRAMIENFLILQWRAGALAGAKPEHAFYVKVGLGQTMTAQDILEGNMNVEIGLAVVRPAEFIILKFSHKMQES
Putative phage tail sheath protein FI H 692 Algoriphagus Machipongonensis MATYKTPGVYIEEITKFPPSVAQVETAIPAFIGYTQFARTKPSVDSDDLILKPKRISSLLDFTTYYGGAQNEQGITVKLTDTLIEGAENRTINVPEPTFKSPYLMFYSLQMYFANGGGPCYIVSTGVYDDWSDSETPPTINFSDLESGLAVIRKEDEPTLLLFPDATNLPTDDEFYSLYNSALMQCNDLQDRFTILDTYSDQTYNDGVEDLDPIPALRNGINLTKDYLKYGAAYYPFVQTILNYQYSADEIVIQHLSYNPNAIATALDNLNAVNGPTFIDAILDDLRDLSLPDISGEISDAVGFMYDDVDGFDIDGTFTTNSVKVANFASLVESVLSTLNELIDAKEEINKDVNSAIASSEEDNAIKTAISDALDVFNEDFEGADKIESVAKNLSDLLIKIKQADTNTKVENVLSINALNFSAEFEKLLTYDVNTGLTASVTLDLFANIGTRLDDIIAAVSAAEPIDVNNGKLNGRLLSDIEPLDNATYNTILLEINSHKVTLPPSSSMAGAYARVDNDRGVWKSPANIGLNYVSKPSVTVSHEEQESMNVHGTGKSVNAIRSFVGKGTLVWGARTLAGNDNEWRYISVRRFFNMAEESIKKATEQFVFEPNDGNTWVRVRAMIENFLILQWRAGALAGAKPEHAFYVKVGLGQTMTAQDILEGNMNVEIGLAVVRPAEFIILKFSHKMQES
Putative phage tail sheath protein FI I 692 Algoriphagus Machipongonensis MATYKTPGVYIEEITKFPPSVAQVETAIPAFIGYTQFARTKPSVDSDDLILKPKRISSLLDFTTYYGGAQNEQGITVKLTDTLIEGAENRTINVPEPTFKSPYLMFYSLQMYFANGGGPCYIVSTGVYDDWSDSETPPTINFSDLESGLAVIRKEDEPTLLLFPDATNLPTDDEFYSLYNSALMQCNDLQDRFTILDTYSDQTYNDGVEDLDPIPALRNGINLTKDYLKYGAAYYPFVQTILNYQYSADEIVIQHLSYNPNAIATALDNLNAVNGPTFIDAILDDLRDLSLPDISGEISDAVGFMYDDVDGFDIDGTFTTNSVKVANFASLVESVLSTLNELIDAKEEINKDVNSAIASSEEDNAIKTAISDALDVFNEDFEGADKIESVAKNLSDLLIKIKQADTNTKVENVLSINALNFSAEFEKLLTYDVNTGLTASVTLDLFANIGTRLDDIIAAVSAAEPIDVNNGKLNGRLLSDIEPLDNATYNTILLEINSHKVTLPPSSSMAGAYARVDNDRGVWKSPANIGLNYVSKPSVTVSHEEQESMNVHGTGKSVNAIRSFVGKGTLVWGARTLAGNDNEWRYISVRRFFNMAEESIKKATEQFVFEPNDGNTWVRVRAMIENFLILQWRAGALAGAKPEHAFYVKVGLGQTMTAQDILEGNMNVEIGLAVVRPAEFIILKFSHKMQES
Putative phage tail sheath protein FI J 692 Algoriphagus Machipongonensis MATYKTPGVYIEEITKFPPSVAQVETAIPAFIGYTQFARTKPSVDSDDLILKPKRISSLLDFTTYYGGAQNEQGITVKLTDTLIEGAENRTINVPEPTFKSPYLMFYSLQMYFANGGGPCYIVSTGVYDDWSDSETPPTINFSDLESGLAVIRKEDEPTLLLFPDATNLPTDDEFYSLYNSALMQCNDLQDRFTILDTYSDQTYNDGVEDLDPIPALRNGINLTKDYLKYGAAYYPFVQTILNYQYSADEIVIQHLSYNPNAIATALDNLNAVNGPTFIDAILDDLRDLSLPDISGEISDAVGFMYDDVDGFDIDGTFTTNSVKVANFASLVESVLSTLNELIDAKEEINKDVNSAIASSEEDNAIKTAISDALDVFNEDFEGADKIESVAKNLSDLLIKIKQADTNTKVENVLSINALNFSAEFEKLLTYDVNTGLTASVTLDLFANIGTRLDDIIAAVSAAEPIDVNNGKLNGRLLSDIEPLDNATYNTILLEINSHKVTLPPSSSMAGAYARVDNDRGVWKSPANIGLNYVSKPSVTVSHEEQESMNVHGTGKSVNAIRSFVGKGTLVWGARTLAGNDNEWRYISVRRFFNMAEESIKKATEQFVFEPNDGNTWVRVRAMIENFLILQWRAGALAGAKPEHAFYVKVGLGQTMTAQDILEGNMNVEIGLAVVRPAEFIILKFSHKMQES
Phage tail protein K 142 Algoriphagus Machipongonensis MSYPLSKFHFSVEWGGTKIGFTEVSGLDLETEIIEYRHGASPEYSKIKMPGMQKFSNITLKRGTFKSDNEYFQWYNTINLNKVERRDLTISLLNEEHEPVVTWKVKNAWPLKVQSTDLKGDGNEVAIESMELAHEGLVIQNE
Phage tail protein L 142 Algoriphagus Machipongonensis MSYPLSKFHFSVEWGGTKIGFTEVSGLDLETEIIEYRHGASPEYSKIKMPGMQKFSNITLKRGTFKSDNEYFQWYNTINLNKVERRDLTISLLNEEHEPVVTWKVKNAWPLKVQSTDLKGDGNEVAIESMELAHEGLVIQNE
Phage tail protein M 142 Algoriphagus Machipongonensis MSYPLSKFHFSVEWGGTKIGFTEVSGLDLETEIIEYRHGASPEYSKIKMPGMQKFSNITLKRGTFKSDNEYFQWYNTINLNKVERRDLTISLLNEEHEPVVTWKVKNAWPLKVQSTDLKGDGNEVAIESMELAHEGLVIQNE
Phage tail protein N 142 Algoriphagus Machipongonensis MSYPLSKFHFSVEWGGTKIGFTEVSGLDLETEIIEYRHGASPEYSKIKMPGMQKFSNITLKRGTFKSDNEYFQWYNTINLNKVERRDLTISLLNEEHEPVVTWKVKNAWPLKVQSTDLKGDGNEVAIESMELAHEGLVIQNE
Phage tail protein O 142 Algoriphagus Machipongonensis MSYPLSKFHFSVEWGGTKIGFTEVSGLDLETEIIEYRHGASPEYSKIKMPGMQKFSNITLKRGTFKSDNEYFQWYNTINLNKVERRDLTISLLNEEHEPVVTWKVKNAWPLKVQSTDLKGDGNEVAIESMELAHEGLVIQNE
Phage tail protein P 142 Algoriphagus Machipongonensis MSYPLSKFHFSVEWGGTKIGFTEVSGLDLETEIIEYRHGASPEYSKIKMPGMQKFSNITLKRGTFKSDNEYFQWYNTINLNKVERRDLTISLLNEEHEPVVTWKVKNAWPLKVQSTDLKGDGNEVAIESMELAHEGLVIQNE
Phosphoserine phosphatase SerB Q 581 Algoriphagus Machipongonensis MNNSGTIETSQSVDRVTHKILIDGSEIPGTYQVKSIQVTKEVNRIPTARLVILDGDAAERDFKVSNSDHFVPGKEIEITVGYHSDDETIFKGVVIRQNLKIRNNQSILIVESRDMAVKMTLRRKSKYFYELSDSDILEELISNHGLEADVASTENQHTELVQYDVTDWDFMMLRLQANGLLCLVDDGKVSIQKPDLSSEALETVTFGATILEFDAEMDARNQLPKVVSQAWNMSDQELLEKEGVDPSLETNGNISSSDLASLFDQEEEVLRHGGSKKDGSLQEWANAKWTFQQLAKTRGRIKFQGIPTVKPGVNLLLEGVGDRFNGKVFITGVNHQISEGNWTVDAQFGLNPEWFSESESNIHTPPAAGLTAAISGLHVGLVTDLEDPDGEDRIKVKIPIINNEEEGVWCRQAFPDAGNERGITFRPEIEDEVIVGFINEDPNDAVVLGMLHSSANPNPIEASNDNHEKGIQTRSGIKMIFNDEKSILQIETPTGNLVTLDDDAGSITIEDQNGNKTVMDSDGITMESAKDMNLKASGDINLEGTNVNIKANAEFKAEGSAGAEVSTSAVAVLKGSLVQIN
Phosphoserine phosphatase SerB R 581 Algoriphagus Machipongonensis MNNSGTIETSQSVDRVTHKILIDGSEIPGTYQVKSIQVTKEVNRIPTARLVILDGDAAERDFKVSNSDHFVPGKEIEITVGYHSDDETIFKGVVIRQNLKIRNNQSILIVESRDMAVKMTLRRKSKYFYELSDSDILEELISNHGLEADVASTENQHTELVQYDVTDWDFMMLRLQANGLLCLVDDGKVSIQKPDLSSEALETVTFGATILEFDAEMDARNQLPKVVSQAWNMSDQELLEKEGVDPSLETNGNISSSDLASLFDQEEEVLRHGGSKKDGSLQEWANAKWTFQQLAKTRGRIKFQGIPTVKPGVNLLLEGVGDRFNGKVFITGVNHQISEGNWTVDAQFGLNPEWFSESESNIHTPPAAGLTAAISGLHVGLVTDLEDPDGEDRIKVKIPIINNEEEGVWCRQAFPDAGNERGITFRPEIEDEVIVGFINEDPNDAVVLGMLHSSANPNPIEASNDNHEKGIQTRSGIKMIFNDEKSILQIETPTGNLVTLDDDAGSITIEDQNGNKTVMDSDGITMESAKDMNLKASGDINLEGTNVNIKANAEFKAEGSAGAEVSTSAVAVLKGSLVQIN
Phosphoserine phosphatase SerB S 581 Algoriphagus Machipongonensis MNNSGTIETSQSVDRVTHKILIDGSEIPGTYQVKSIQVTKEVNRIPTARLVILDGDAAERDFKVSNSDHFVPGKEIEITVGYHSDDETIFKGVVIRQNLKIRNNQSILIVESRDMAVKMTLRRKSKYFYELSDSDILEELISNHGLEADVASTENQHTELVQYDVTDWDFMMLRLQANGLLCLVDDGKVSIQKPDLSSEALETVTFGATILEFDAEMDARNQLPKVVSQAWNMSDQELLEKEGVDPSLETNGNISSSDLASLFDQEEEVLRHGGSKKDGSLQEWANAKWTFQQLAKTRGRIKFQGIPTVKPGVNLLLEGVGDRFNGKVFITGVNHQISEGNWTVDAQFGLNPEWFSESESNIHTPPAAGLTAAISGLHVGLVTDLEDPDGEDRIKVKIPIINNEEEGVWCRQAFPDAGNERGITFRPEIEDEVIVGFINEDPNDAVVLGMLHSSANPNPIEASNDNHEKGIQTRSGIKMIFNDEKSILQIETPTGNLVTLDDDAGSITIEDQNGNKTVMDSDGITMESAKDMNLKASGDINLEGTNVNIKANAEFKAEGSAGAEVSTSAVAVLKGSLVQIN
inner protein (Algo6) T 52 Algoriphagus Machipongonensis MPIEIKELHIKITVDDSNNAGRGGASSGEDKQQLVAQCVEQVLDVLKSQKER
inner protein (Algo6) U 52 Algoriphagus Machipongonensis MPIEIKELHIKITVDDSNNAGRGGASSGEDKQQLVAQCVEQVLDVLKSQKER
inner protein (Algo6) V 52 Algoriphagus Machipongonensis MPIEIKELHIKITVDDSNNAGRGGASSGEDKQQLVAQCVEQVLDVLKSQKER
Putative tail lysozyme W 137 Algoriphagus Machipongonensis MMEKSKDFLGTGWGFPPEFETSIGQVKTTSGVEDIQKSLEILFSTKIGERIMQPTYGCNLDELLFSPINRTLKTYVIELIKNAILYHEPRIDPEKIDITQGNEIEGELLIHLQYIVRATNSRKNMVYPFYLEEGTNI
Putative tail lysozyme X 137 Algoriphagus Machipongonensis MMEKSKDFLGTGWGFPPEFETSIGQVKTTSGVEDIQKSLEILFSTKIGERIMQPTYGCNLDELLFSPINRTLKTYVIELIKNAILYHEPRIDPEKIDITQGNEIEGELLIHLQYIVRATNSRKNMVYPFYLEEGTNI
Phospholipid/glycerol acyltransferase Y 147 Algoriphagus Machipongonensis MATYYPPSSFHFLVEFTGIDAKNNDHEFQSVSGLSVDIDTEEFAEGGENRFKHKFPVKTKYPNLVLKRGVLVDSKVISWCRDAIEDFEFKPIDLTVKLLNEEHQPLMTWNVVHAYPVKWSVEDFNAQESKMAIESVELSYNYFKTIV
Phospholipid/glycerol acyltransferase Z 147 Algoriphagus Machipongonensis MATYYPPSSFHFLVEFTGIDAKNNDHEFQSVSGLSVDIDTEEFAEGGENRFKHKFPVKTKYPNLVLKRGVLVDSKVISWCRDAIEDFEFKPIDLTVKLLNEEHQPLMTWNVVHAYPVKWSVEDFNAQESKMAIESVELSYNYFKTIV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-09-17
Deposition Author(s): Ericson, C. , Feldmueller, M. , Lien, Y.W. , Pilhofer, M. , Xu, J.