PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6ZHX

Cryo-em structure of the regulatory linker of alc1 bound to the nucleosome's acidic patch: nucleosome class.

PDB DOI: 10.2210/pdb6zhx/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Synthetic Construct , Xenopus Laevis , Synthetic Construct

Deposited: 2020-06-24
Deposition Author(s): Bacic, L. , Croll, T.I. , Deindl, S. , Gaullier, G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.5 Å

Literature

Cryo-em structure of the regulatory linker of alc1 bound to the nucleosome's acidic patch: nucleosome class.

Bacic, L. , Croll, T.I. , Deindl, S. , Gaullier, G.

Primary Citation of Related Structures: 6ZHX


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 136 Synthetic Construct , Xenopus Laevis , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA
Histone H3 E 136 Synthetic Construct , Xenopus Laevis , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Synthetic Construct , Xenopus Laevis , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Synthetic Construct , Xenopus Laevis , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 C 130 Synthetic Construct , Xenopus Laevis , Synthetic Construct MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2A type 1 G 130 Synthetic Construct , Xenopus Laevis , Synthetic Construct MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B 1.1 D 123 Synthetic Construct , Xenopus Laevis , Synthetic Construct MAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 123 Synthetic Construct , Xenopus Laevis , Synthetic Construct MAKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Chromodomain-helicase-DNA-binding protein 1-like K 37 Synthetic Construct , Xenopus Laevis , Synthetic Construct EKASQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEEK
Chromodomain-helicase-DNA-binding protein 1-like L 37 Synthetic Construct , Xenopus Laevis , Synthetic Construct EKASQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEEK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (145-MER) Widom 601 sequence i 145 NA ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
DNA (145-MER) Widom 601 sequence j 145 NA ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-06-24
Deposition Author(s): Bacic, L. , Croll, T.I. , Deindl, S. , Gaullier, G.