PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6ZCZ

Crystal structure of receptor binding domain of sars-cov-2 spike glycoprotein in ternary complex with ey6a fab and a nanobody.

PDB DOI: 10.2210/pdb6zcz/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2020-06-12
Deposition Author(s): Fry, E.E. , Ren, J. , Stuart, D.I. , Zhao, Y. , Zhou, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å

6zcz
Literature

Crystal structure of receptor binding domain of sars-cov-2 spike glycoprotein in ternary complex with ey6a fab and a nanobody.

Fry, E.E. , Ren, J. , Stuart, D.I. , Zhao, Y. , Zhou, D.

Primary Citation of Related Structures: 6ZCZ


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 E 205 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 ETGHHHHHHTNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGKK
Nanobody F 151 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGLMQAGGSLRLSCAVSGRTFSTAAMGWFRQAPGKEREFVAAIRWSGGSAYYADSVKGRFTISRDKAKNTVYLQMNSLKYEDTAVYYCAQTHYVSYLLSDYATWPYDYWGQGTQVTVSSGPGGQHHHHHHGAEQKLISEEDLS
EY6A heavy chain H 226 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 EVQLVESGGGVVQPGRSLRLSCAASAFTFSSYDMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDGGKLWVYYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
EY6A light chain L 215 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSTLALTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-06-12
Deposition Author(s): Fry, E.E. , Ren, J. , Stuart, D.I. , Zhao, Y. , Zhou, D.