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FASTA Sequence PDB Format mmCIF Format
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6YTF

Acinetobacter baumannii ribosome-tigecycline complex - 30s subunit head

PDB DOI: 10.2210/pdb6ytf/pdb

Classification: RIBOSOME
Organism(s): Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81)

Deposited: 2020-04-24
Deposition Author(s): Edwards, T.A. , Nicholson, D. , O'Neill, A.J. , Ranson, N.A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

6ytf
Literature

Acinetobacter baumannii ribosome-tigecycline complex - 30s subunit head

Edwards, T.A. , Nicholson, D. , O'Neill, A.J. , Ranson, N.A.

Primary Citation of Related Structures: 6YTF


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16S ribosomal RNA 3 1544 NA UUUAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGGGAAGGUAGCUUGCUACCGGACCUAGCGGCGGACGGGUGAGUAAUGCUUAGGAAUCUGCCUAUUAGUGGGGGACAACAUCUCGAAAGGGAUGCUAAUACCGCAUACGUCCUACGGGAGAAAGCAGGGGAUCUUCGGACCUUGCGCUAAUAGAUGAGCCUAAGUCGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCUGUAGCGGGUCUGAGAGGAUGAUCCGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGGAACCCUGAUCCAGCCAUGCCGCGUGUGUGAAGAAGGCCUUAUGGUUGUAAAGCACUUUAAGCGAGGAGGAGGCUACUUUAGUUAAUACCUAGAGAUAGUGGACGUUACUCGCAGAAUAAGCACCGGCUAACUCUGUGCCAGCAGCCGCGGUAAUACAGAGGGUGCGAGCGUUAAUCGGAUUUACUGGGCGUAAAGCGUGCGUAGGCGGCUUAUUAAGUCGGAUGUGAAAUCCCCGAGCUUAACUUGGGAAUUGCAUUCGAUACUGGUGAGCUAGAGUAUGGGAGAGGAUGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGAUGGCGAAGGCAGCCAUCUGGCCUAAUACUGACGCUGAGGUACGAAAGCAUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCAUGCCGUAAACGAUGUCUACUAGCCGUUGGGGCCUUUGAGGCUUUAGUGGCGCAGCUAACGCGAUAAGUAGACCGCCUGGGGAGUACGGUCGCAAGACUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGCCUUGACAUACUAGAAACUUUCCAGAGAUGGAUUGGUGCCUUCGGGAAUCUAGAUACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUUUCCUUACUUGCCAGCAUUUCGGAUGGGAACUUUAAGGAUACUGCCAGUGACAAACUGGAGGAAGGCGGGGACGACGUCAAGUCAUCAUGGCCCUUACGGCCAGGGCUACACACGUGCUACAAUGGUCGGUACAAAGGGUUGCUACACAGCGAUGUGAUGCUAAUCUCAAAAAGCCGAUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGCGGAUCAGAAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUUGUUGCACCAGAAGUAGCUAGCCUAACUGCAAAGAGGGCGGUUACCACGGUGUGGCCGAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUAACGAA
E-site tRNA 7 77 NA CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
mRNA 9 4 NA UUUU

Proteins
Molecule Chains Sequence Length Organism Sequence
30S ribosomal protein S19 T 91 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MPRSLKKGPFVDAHLFAKVEAAVASNSRKPIKTWSRRSMILPDFVGLTISVHNGRNHVPVIVTEHMVGHKLGEFAPTRTYRGHGVDKKSKR
30S ribosomal protein S3 D 250 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MGQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLTKKLKNAMVSNILIERPSGAAKVTISTARPGIVIGKKGEDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAIASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYATMRAETTYGTIGVKVWIFRGEILGGMKQVMNPAPAEERPAKRGRGRGEGQERRGRRGDRAADKGE
30S ribosomal protein S7 H 156 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MPRRRVVAAREILPDPKFSSQTIAKFMNHVMQDGKKSIAESIVYGALERVQEKNKVDPVEFFETTLEKVRPMVEVKARRVGGATYQVPMEVRPSRRTALAMRWLVDAAAKRSEKTMALRLAGELLDAAEGKGAAIKKREDVHRMAEANKAFSHYRF
30S ribosomal protein S9 J 128 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MATNYGTGRRKTATARVFLSAGTGKLVINNRTLEQYFGRETARMVVRQPLELLEATEKYDLYITVKGGGIGGQAGAIRHGITRALIAADETLKPVLRQAGFVTRDAREVERKKLGLRKARKRPQFSKR
30S ribosomal protein S10 K 103 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MSNQRIRIRLKSFDHRLIDQSAQEIVETAKRTGAQVCGPIPMPTRIERFNVLTSPHVNKDARDQYEIRTYKRLIDIVQPTDKTVDALMKLDLAAGVDVQIALG
30S ribosomal protein S13 N 118 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MARIAGVNIPDNKHAVISLTYIFGIGRHTAKNILAAVGITETTKIRELDDAQLDAIRAEVAKVPTEGDLRREISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKPIKK
30S ribosomal protein S14 O 101 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MAKKGMINRELKREKTVAKYAAKRAELKATIANVNASDEERFEAMLKLQALPRNASPVRLRNRCGLTGRPHGYFRKFGLSRNKLRDTVMQGDVPGVVKASW
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-04-24
Deposition Author(s): Edwards, T.A. , Nicholson, D. , O'Neill, A.J. , Ranson, N.A.