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FASTA Sequence PDB Format mmCIF Format
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6YSI

Acinetobacter baumannii ribosome-tigecycline complex - 50s subunit

PDB DOI: 10.2210/pdb6ysi/pdb

Classification: RIBOSOME
Organism(s): Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841

Deposited: 2020-04-22
Deposition Author(s): Edwards, T.A. , Nicholson, D. , O'Neill, A.J. , Ranson, N.A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.5 Å

6ysi
Literature

Acinetobacter baumannii ribosome-tigecycline complex - 50s subunit

Edwards, T.A. , Nicholson, D. , O'Neill, A.J. , Ranson, N.A.

Primary Citation of Related Structures: 6YSI


Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein L35 A 64 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDVASVRRMCPYI
50S ribosomal protein L17 J 125 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MRHRNSGVKLGRTSSHRKAMFQNLANSLFEHELIKTTLPKAKELRRVAEPLITLAKNDTVANRRLAFARTRNAATVGKLFTVLGPRYKERNGGYLRVLKAGFRAGDAAPMAYVELVDREVNTSAE
50S ribosomal protein L18 K 116 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MNEKKQSRLRRAKSTRLHIRALGATRLCVNRTPRHIYAQVISADGGKVLAQASTLDASLRSGTTGNIEAATKVGALIAERAKAAGVTKVAFDRSGFKYHGRIKALADAAREGGLEF
50S ribosomal protein L19 L 122 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MSGKHPLVQAIENSQLKTDLPEFAPGDTVVVQVKVKEGDRERLQAFEGVVIAKKNRGLNSAFTVRKISSGVGVERVFQTHSPVVAKIEVKRRGDVRRAKLYYLRDLSGKAARIREKLPARKA
50S ribosomal protein L20 M 119 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MARVKRGVVAHRRHKKILARAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQKKRQFRALWIARINAGARQNGLSYSRMIDGLKKAQVIIDRRVLADIAMHDAVAFAALAEKAKGALAA
50S ribosomal protein L21 N 103 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MYAVIQSGGKQHRVVEGETLKVELLKAESGATITFDDVLMVVNGDNIQIGAPVVAGAKVTAEVIGHGRHDKIRIIKMRRRKHYRKQQGHRQWFTELKITGISG
50S ribosomal protein L22 O 110 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MMEVTAKLRGAAISAQKARLVADLIRGKSVAHALNILNFSNKKAAVLVKKALESAIANAEHNNSLDVDDLKVSTIYVDEGMSLKRIMPRAKGRADRITKRTCHITVKVGV
50S ribosomal protein L23 P 106 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MNNERIYQVLKGPVFSEKAQVLGDTAGVQVFKVDINATKLEIKKAVEKLFGVEVVKVNTTITKGKTKRFGRTLGRRSDVKKAYVTLKAGQDVEMADLGDTAESAAE
50S ribosomal protein L24 Q 105 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MAKIKKGDQVIVIAGKEKGKQGTVLSVSEDRVKVEGLNLVKKHQKPNRVTGAEGGIVTQEASLHISNVAILNATTQKADRVGYQVIDGVKTRVYKSTGESVAVAK
50S ribosomal protein L25 R 98 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MANFVLNAQARAEDKQGKGASRRLRRESLVPAIIYGGNAEPVAVTLELRELVKALESNAFFEEVVEIKVGDKVENVKIQALQRHPAKNTPMHADFKRA
50S ribosomal protein L27 S 85 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MATKKAGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVETV
50S ribosomal protein L36 B 38 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MKVQASVKKICGSCKVIRRNGVIRVICSAEPRHKQRQG
50S ribosomal protein L28 T 78 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MSKVCQVTGKRPVVGNNVSHANNKTKRRFEPNLHHHRFWLESEKRFVRLRLTTKGMRIIDKLGIEKVVADLRAQGQKI
50S ribosomal protein L29 U 65 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MKTKDLREKSVEELKALLDEQQLNQFRLRMAKATGQLGKSHEVQVARKTIARIKTLLTEKQGNGQ
50S ribosomal protein L30 V 58 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
50S ribosomal protein L31 W 74 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MRADIHPKYEKLVATCSCGNVIETRSALGKETIYLDVCSACHPFYTGKQKNVDTGGRIDKFKQRFAGMSRSIKR
50S ribosomal protein L32 X 61 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MAVQQNRKSRSRRDMRRSHDALTENALTVDQATGETHRRHHVTKDGFYRGRQLFAKAADAE
50S ribosomal protein L33 Y 51 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MRDKIRLVSSAGTGYFYTTTKNKRTMPEKMEIKKFDPKIRQHVIFKEAKIK
50S ribosomal protein L34 Z 44 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MKRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRHSLTV
50S ribosomal protein L4 C 200 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMSVAAAKKIEVELG
50S ribosomal protein L5 D 178 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MARLKARYNDELKAKLQEELSIKNVMEIPRITKITLNMGVGAAATDKKLLDGAVADMQLIAGQKPVVTLARKSIAGFKIRDGWPIGCKVTLRGDQMYEFLDRLISIAIPRIRDFRGFSAKSFDGRGNYSMGLKEQIVFPEIDFDKIDRIRGMDITITTTARTDDEGRALMRAFGFPFK
50S ribosomal protein L6 E 177 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MSRVAKAPVTVPNGVTVTQNGRQVEVKGSKGTLSFNLHALVELKQEEGKLQLAPAKESKDAWMQAGTARAVLNNLVKGVSEGFERKLQLVGVGYKAAVKGTVVNLNLGYSHPIDYALPEGVTAETPTATEIILKSANKQLLGQVAAEIRAYRSPEPYKGKGVRYSDEVILRKEAKKK
50S ribosomal protein L13 F 142 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MKTLSAKPAEVQHDWFVVDATGKTLGRLATEIARRLRGKHKTSYTPHVDAGDYIIVINAEQVQVTGNKALDKKYYRHTEFPGGLKETNFEKLVAHKPEEIFERAVKGMLPKGPLGYAMIKKMKVYAGSEHPHAAQQPQVLDI
50S ribosomal protein L14 G 122 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MIQTETMLDVADNSGARRVQCIKVLGGSHRRYASVGDIIKVTVKEAIPRARVKKGDVMNAVVVRTKFGIRRPDGSVIRFDDNAAVILNNNKAPIATRIFGPVTRELRTEQFMKIISLAPEVL
50S ribosomal protein L15 H 146 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MTLRLNELAPAEGAKREHRRLGRGIGSGVGKTGGRGIKGQKSRKSGGVRPGFEGGQTAIYRRLPKFGFTSQIALKTAEVRLSELSKVEGDIVSLETLKAANVVRRDQIRARIVLSGEITRAFTVQGVALTKGAKAAIEAAGGKVEE
50S ribosomal protein L16 I 137 Acinetobacter Baumannii Atcc 19606 = Cip 70.34 = Jcm 6841 MLQPKRTKFRKVHKGRNTGLAHRGSTVSFGSIAIKATERGRMTARQIEAARRTISRRIKRGGKIFIRVFPDKPITEKPLEVRMGNGKGNVEYWVCEIKPGKILYEIEGVNEDLAREAFALAAAKLPFKTTIVTRTVM

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
23S ribosomal RNA 1 2903 NA AGUCAAGUAAUUAAGUGCAUGUGGUGGAUGCCUUGGCAGUCAGAGGCGAUGAAAGACGUGAUAGCCUGCGAAAAGCUCCGGGGAGGCGGCAAAUAUCCUUUGAUCCGGAGAUGUCUGAAUGGGGGAACCCACCUACUUUAAGGUAGGUAUUGCAACAUGAAUACAUAGUGUUGCAAGGCGAACGAGGGGAAGUGAAACAUCUCAGUACCCUUAGGAAAAGAAAUCAAUUGAGAUUCCCUCAGUAGCGGCGAGCGAACGGGGAUCAGCCCAUUAAGUUAUGUGUGUUUUAGUGGAACGCUCUGGGAAGUGCGAACGUAGAGGGUGAUAUUCCCGUACACGAAAGGGCACACAUAAUGAUGACGAGUAGGGCGAGGCACGUGAAACCUUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCUGUGAGGGGAGUGAAAUAGAUCCUGAAACCGCAUGCAUACAAGCAGUGGGAGCACCUUUGUGGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCAGUAGCGAGGUUAACCGUAUAGGGGAGCCGUAGAGAAAUCGAGUCUUAAUAGGGCGUUUAGUUGCUGGGUAUAGACCCGAAACCAGGCGAUCUAUCCAUGAGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCCACUGUCGUUGAAAAGCCAGGGGAUGACUUGUGGAUAGGGGUGAAAGGCUAAUCAAGCCUGGUGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGGACGAAUACCAUAGGGGGUAGAGCACUGUUUCGGCUAGGGGGUCAUCCCGACUUACCAAACCGAUGCAAACUCCGAAUACCUAUGAGUACUAUCCGGGAGACAGACUGCGGGUGCUAACGUCCGUAGUCAAGAGGAAAACAAUCCAGACCGCCAGCUAAGGCCCCAAAAUCAUAGUUAAGUGGGAAACGAUGUGGGAAGGCAUAGACAGCUAGGAGGUUGGCUUAGAAGCAGCCACCCUUUAAAGAAAGCGUAAUAGCUCACUAGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAAACUAUGUGCCGAAGCUGCGGAUGUAUACUUUGUAUACGUGGUAGGGGAGCGUUCUGUAAGCCGAUGAAGGUGUGUUGAGAAGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACGUGAGUAACGACAAAACGGGUGAAAAACCCGUUCGCCGAAAGACCAAGGGUUCCAGUCCAACGUUAAUCGGGGCUGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAAAUGGUUAAUAUUCCAUUACUUCUGUGUAAUGCGAUGAGAGGACGGAGAAGGCUAAAUCAGCCUGGCGUUGGUUGUCCAGGUGAAAGGAUGUAGGCAUGUAUCUUAGGCAAAUCCGGGGUACUCUAUGCUGAGAUCUGAUAGCAAGCUGUACUUGUACAGCGAAGUGGUUGAUGCCAUGCUUCCAGGAAAAGUCUCUAAGCUUCAGUUACACAGGAAUCGUACCCGAAACCGACACAGGUGGUCAGGUCGAGUAGACCAAGGCGCUUGAGAGAACUCUGCUGAAGGAACUAGGCAAAAUGGUACCGUAACUUCGGGAGAAGGUACGCUGUUGUUGGUGAUGGAACUCGCUUCCUGAGCUGACGACAGCCGCAGAAACCAGGCCGCUGCAACUGUUUAUUAAAAACAUAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGAUGCCUGCCCGGUGCUGGAAGGUUAAUUGAUGGGGUUAGCGUAAGCGAAGCUCUUGAUCGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCAUAAUGAUGGCGGCGCUGUCUCCAGCAGAGGCUCAGUGAAAUCGAAAUCGCUGUGAAGAUGCAGUGUACCCGCGGCUAGACGGAAAGACCCCGUGAACCUUUACUGCAGCUUGACACUGAACUUUGACCUUACUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCUGGAACGCUAGUUCCAGUGGAGCCGUCCUUGAAAUACCACCCUGGUAAUGUUGAGGUUCUAACUCUGUCCCGUGAUCCGGGACGAGGACCGUGUCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGUACGAAGGUGCGCUCAGCGUGGUCGGAAAUCACGCGUAGAGUAUAAAGGCAAAAGCGCGCUUAACUGCGAGACCCACAAGUCGAGCAGGUACGAAAGUAGGUCUUAGUGAUCCGGUGGUUCUGUAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCUGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCUCAUCCUGGGGCUGAAGCAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGAGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUACCGUGGGCGCUGGAAAUUUGAGAGGAUCUGCUCCUAGUACGAGAGGACCAGAGUGGACGAACCUCUGGUGUACCGGUUGUGACGCCAGUCGCAUCGCCGGGUAGCUAUGUUCGGAAGGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCUACCUCAAGAUAAGAUUUCCCUAGGACUUUAUGUCCUCUAAAGAGCCGUUCGAGACUAGGACGUUGAUAGGUUGGAUGUGGAAGCAUAGUGAUAUGUGAAGCUGACCAAUACUAAUUGCUCGUGAGGCUUGACUAUACAACACCCA
5S ribosomal RNA 5 117 NA UGCUGGCGACCAUAGCAAGAGUGAACCACCUGAUCCCUUCCCGAACUCAGAAGUGAAACCUCUUAGCGCUGAUGGUAGUGUGGGAUUACCCAUGUGAGAGUAAGUCAUCGCCAGCUC
E-site tRNA 6 77 NA CGCGGGGNGGAGCAGCCUGGNAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGNNCAAAUCCGGCCCCCGCAACCA
E-site tRNA 8 77 NA CGCGGGGNGGAGCAGCCUGGNAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGNNCAAAUCCGGCCCCCGCAACCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-04-22
Deposition Author(s): Edwards, T.A. , Nicholson, D. , O'Neill, A.J. , Ranson, N.A.