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FASTA Sequence PDB Format mmCIF Format
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6YPU

Acinetobacter baumannii ribosome-amikacin complex - 30s subunit body

PDB DOI: 10.2210/pdb6ypu/pdb

Classification: RIBOSOME
Organism(s): Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81)

Deposited: 2020-04-16
Deposition Author(s): Edwards, T.A. , Nicholson, D. , O'Neill, A.J. , Ranson, N.A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Literature

Acinetobacter baumannii ribosome-amikacin complex - 30s subunit body

Edwards, T.A. , Nicholson, D. , O'Neill, A.J. , Ranson, N.A.

Primary Citation of Related Structures: 6YPU


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16S ribosomal RNA 2 1544 NA UUUAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGGGAAGGUAGCUUGCUACCGGACCUAGCGGCGGACGGGUGAGUAAUGCUUAGGAAUCUGCCUAUUAGUGGGGGACAACAUCUCGAAAGGGAUGCUAAUACCGCAUACGUCCUACGGGAGAAAGCAGGGGAUCUUCGGACCUUGCGCUAAUAGAUGAGCCUAAGUCGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCUGUAGCGGGUCUGAGAGGAUGAUCCGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGGAACCCUGAUCCAGCCAUGCCGCGUGUGUGAAGAAGGCCUUAUGGUUGUAAAGCACUUUAAGCGAGGAGGAGGCUACUUUAGUUAAUACCUAGAGAUAGUGGACGUUACUCGCAGAAUAAGCACCGGCUAACUCUGUGCCAGCAGCCGCGGUAAUACAGAGGGUGCGAGCGUUAAUCGGAUUUACUGGGCGUAAAGCGUGCGUAGGCGGCUUAUUAAGUCGGAUGUGAAAUCCCCGAGCUUAACUUGGGAAUUGCAUUCGAUACUGGUGAGCUAGAGUAUGGGAGAGGAUGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGAUGGCGAAGGCAGCCAUCUGGCCUAAUACUGACGCUGAGGUACGAAAGCAUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCAUGCCGUAAACGAUGUCUACUAGCCGUUGGGGCCUUUGAGGCUUUAGUGGCGCAGCUAACGCGAUAAGUAGACCGCCUGGGGAGUACGGUCGCAAGACUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGCCUUGACAUACUAGAAACUUUCCAGAGAUGGAUUGGUGCCUUCGGGAAUCUAGAUACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUUUCCUUACUUGCCAGCAUUUCGGAUGGGAACUUUAAGGAUACUGCCAGUGACAAACUGGAGGAAGGCGGGGACGACGUCAAGUCAUCAUGGCCCUUACGGCCAGGGCUACACACGUGCUACAAUGGUCGGUACAAAGGGUUGCUACACAGCGAUGUGAUGCUAAUCUCAAAAAGCCGAUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGCGGAUCAGAAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUUGUUGCACCAGAAGUAGCUAGCCUAACUGCAAAGAGGGCGGUUACCACGGUGUGGCCGAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUAACGAA
16S ribosomal RNA 4 1544 NA UUUAACUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGGGAAGGUAGCUUGCUACCGGACCUAGCGGCGGACGGGUGAGUAAUGCUUAGGAAUCUGCCUAUUAGUGGGGGACAACAUCUCGAAAGGGAUGCUAAUACCGCAUACGUCCUACGGGAGAAAGCAGGGGAUCUUCGGACCUUGCGCUAAUAGAUGAGCCUAAGUCGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCUGUAGCGGGUCUGAGAGGAUGAUCCGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGGAACCCUGAUCCAGCCAUGCCGCGUGUGUGAAGAAGGCCUUAUGGUUGUAAAGCACUUUAAGCGAGGAGGAGGCUACUUUAGUUAAUACCUAGAGAUAGUGGACGUUACUCGCAGAAUAAGCACCGGCUAACUCUGUGCCAGCAGCCGCGGUAAUACAGAGGGUGCGAGCGUUAAUCGGAUUUACUGGGCGUAAAGCGUGCGUAGGCGGCUUAUUAAGUCGGAUGUGAAAUCCCCGAGCUUAACUUGGGAAUUGCAUUCGAUACUGGUGAGCUAGAGUAUGGGAGAGGAUGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGAUGGCGAAGGCAGCCAUCUGGCCUAAUACUGACGCUGAGGUACGAAAGCAUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCAUGCCGUAAACGAUGUCUACUAGCCGUUGGGGCCUUUGAGGCUUUAGUGGCGCAGCUAACGCGAUAAGUAGACCGCCUGGGGAGUACGGUCGCAAGACUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGCCUUGACAUACUAGAAACUUUCCAGAGAUGGAUUGGUGCCUUCGGGAAUCUAGAUACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUUUCCUUACUUGCCAGCAUUUCGGAUGGGAACUUUAAGGAUACUGCCAGUGACAAACUGGAGGAAGGCGGGGACGACGUCAAGUCAUCAUGGCCCUUACGGCCAGGGCUACACACGUGCUACAAUGGUCGGUACAAAGGGUUGCUACACAGCGAUGUGAUGCUAAUCUCAAAAAGCCGAUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGCGGAUCAGAAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUUGUUGCACCAGAAGUAGCUAGCCUAACUGCAAAGAGGGCGGUUACCACGGUGUGGCCGAUGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUAACGAA

Proteins
Molecule Chains Sequence Length Organism Sequence
30S ribosomal protein S16 Q 83 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNPTAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQAKKATA
30S ribosomal protein S17 R 85 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MSEKTVRTLTGKVVSDKMDKSIVVLIERRVQHPLYGKSIRRSTKLHAHDENNVAKIGDVVTIKESRPISKTKAWTLVEVVEAAAE
30S ribosomal protein S18 S 75 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MARFYRRRKFCRFTAENVAYIDYKDIDTLKQYITENGKIVPSRITGTKARYQRQLALAIKQARYLSLIPYTDNHK
30S ribosomal protein S20 U 88 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MANSAQAKKRARQNVKARKHNASLRSMVRTYIKRTLSAIAGGDYAVATEAYKKAVPVIDRMADKGIIHKNKAARHKSRLNAQVKALAN
30S ribosomal protein S21 V 71 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MPQVKLKEGEPVDVAIRRFKRSCEKAGVLADVRKREFYEKPTQERKRKKAAAVKRYQKKLARESVRTTRLY
30S ribosomal protein S2 C 250 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MADYNVSMRDLLQAGAHFGHQTRFWNPKMRQYIFGARNKIHIINLEHTVPALNDALNFANQLASKKNKVLFVGTKRAASNIIREQAQRAGQPYVDHRWLGGMLTNWKTLRQSINRLKDLQTQSQDGTFAKLTKREALERTREMEKLERSLGGVKNMGGLPDALFVIDVDHEAIAIKEAKNLGIPVIGIVDTNSNPDNVDYVIPGNDDAIRAVTLYASAMADAILAGKEYAQSQANAQAKGDDAAKDASEA
30S ribosomal protein S4 E 208 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MARYIGPKCKLSRREGTDLQLKSGVKPFDVKTKKANKAPGQHGQARGGKQSEYSLQLREKQKVRRIYGVLERQFSNYYKEAARVKGATGENLLKLLESRLDNVVYRMGFGSTRAEARQLVSHRSITLNGRRVNIASIQVKAGDVIAVHEGAKQQLRIKNAIELAAQRGIPAWIEVDHSKLEGTFKAAPDRSDLPAEINESLIVELYSK
30S ribosomal protein S5 F 165 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MAKVEQNEGLVEKLVAVDRVAKVVKGGRIFSFTALTVVGDGNGRVGFGRGKAREVPAAISKALEAARRNMITVDLAGTTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRGKSVEEIQG
30S ribosomal protein S6 G 127 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MRHYEIVLLVHPDQSDQVVGMVERYISQIKEADGQIHRLEDWGRRQLAYPINKIHKAHYILMNVECGQSTLDELEELFRYNDAIIRNLIIRREHAITEESLLAKSAEEKRARKAQREEAQQVAQEAE
30S ribosomal protein S8 I 131 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MSMQDTVADMLTRVRNAQMAKKQTVSMPSSKLKVAIANVLQQEGYISNVEVAQEETKSTLTITLKYFEGKPVIEMVKRVSRPGLRQYRGKDKLPSVKQGLGIAIVSTSKGIMTDRAARAAGIGGEVIAFVS
30S ribosomal protein S11 L 128 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MAKDTRTRKKVTRTVSEGVAHIHASFNNTIVTITDRQGNALAWATSGGQGFRGSRKSTPFAAQVAAEVAGKAALDYGLKNLDVLVKGPGPGRESAVRALGAVGYKINSITDVTPIPHNGCRPPKKRRV
30S ribosomal protein S12 M 124 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MATTNQLIRKGRTTLVEKSKVPALKACPQRRGVCTRVYTTTPKKPNSAMRKVCRVRLTSGFEVSSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDCAGVKDRNQSRSKYGAKRPKK
30S ribosomal protein S15 P 89 Acinetobacter Baumannii (Strain Atcc 19606 / Dsm 30007 / Cip 70.34 / Jcm 6841 / Nbrc 109757 / Ncimb 12457 / Nctc 12156 / 81) MALTNADRAEIIAKFARAENDTGSPEVQVALLTAQINDLQGHFKAHKHDHHSRRGLIRMVNQRRKLLDYLNGKDHERYTALIGALGLRR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-04-16
Deposition Author(s): Edwards, T.A. , Nicholson, D. , O'Neill, A.J. , Ranson, N.A.