6YN1
Crystal structure of histone chaperone aplf acidic domain bound to the histone h2a-h2b-h3-h4 octamer
PDB DOI: 10.2210/pdb6yn1/pdb
Classification: CHAPERONE Organism(s): Homo Sapiens , Xenopus Laevis
Deposited: 2020-04-10 Deposition Author(s): Corbeski, I. , Guo, X. , Sixma, T.K. , Van Ingen, H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.35 Å
Crystal structure of histone chaperone aplf acidic domain bound to the histone h2a-h2b-h3-h4 octamer
Corbeski, I. , Guo, X. , Sixma, T.K. , Van Ingen, H.
Primary Citation of Related Structures: 6YN1
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H2B | A | 100 | Homo Sapiens , Xenopus Laevis | MKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B | F | 100 | Homo Sapiens , Xenopus Laevis | MKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B | K | 100 | Homo Sapiens , Xenopus Laevis | MKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2A | P | 107 | Homo Sapiens , Xenopus Laevis | MKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPK |
| Histone H2A | U | 107 | Homo Sapiens , Xenopus Laevis | MKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPK |
| Histone H2A | Z | 107 | Homo Sapiens , Xenopus Laevis | MKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPK |
| Aprataxin and PNK-like factor | E | 43 | Homo Sapiens , Xenopus Laevis | GLDEDNDNVGQPNEYDLNDSFLDDEEEDYEPTDEDSDWEPGKE |
| Aprataxin and PNK-like factor | J | 43 | Homo Sapiens , Xenopus Laevis | GLDEDNDNVGQPNEYDLNDSFLDDEEEDYEPTDEDSDWEPGKE |
| Histone H3 | B | 99 | Homo Sapiens , Xenopus Laevis | MPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3 | G | 99 | Homo Sapiens , Xenopus Laevis | MPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3 | L | 99 | Homo Sapiens , Xenopus Laevis | MPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H2B | Q | 100 | Homo Sapiens , Xenopus Laevis | MKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B | V | 100 | Homo Sapiens , Xenopus Laevis | MKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H4 | C | 84 | Homo Sapiens , Xenopus Laevis | MKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | H | 84 | Homo Sapiens , Xenopus Laevis | MKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | M | 84 | Homo Sapiens , Xenopus Laevis | MKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H3 | R | 99 | Homo Sapiens , Xenopus Laevis | MPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3 | W | 99 | Homo Sapiens , Xenopus Laevis | MPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Aprataxin and PNK-like factor | D | 43 | Homo Sapiens , Xenopus Laevis | GLDEDNDNVGQPNEYDLNDSFLDDEEEDYEPTDEDSDWEPGKE |
| Aprataxin and PNK-like factor | I | 43 | Homo Sapiens , Xenopus Laevis | GLDEDNDNVGQPNEYDLNDSFLDDEEEDYEPTDEDSDWEPGKE |
| Aprataxin and PNK-like factor | N | 43 | Homo Sapiens , Xenopus Laevis | GLDEDNDNVGQPNEYDLNDSFLDDEEEDYEPTDEDSDWEPGKE |
| Histone H4 | S | 84 | Homo Sapiens , Xenopus Laevis | MKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | X | 84 | Homo Sapiens , Xenopus Laevis | MKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Aprataxin and PNK-like factor | O | 43 | Homo Sapiens , Xenopus Laevis | GLDEDNDNVGQPNEYDLNDSFLDDEEEDYEPTDEDSDWEPGKE |
| Aprataxin and PNK-like factor | T | 43 | Homo Sapiens , Xenopus Laevis | GLDEDNDNVGQPNEYDLNDSFLDDEEEDYEPTDEDSDWEPGKE |
| Aprataxin and PNK-like factor | Y | 43 | Homo Sapiens , Xenopus Laevis | GLDEDNDNVGQPNEYDLNDSFLDDEEEDYEPTDEDSDWEPGKE |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2020-04-10 Deposition Author(s): Corbeski, I. , Guo, X. , Sixma, T.K. , Van Ingen, H.