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6YMQ
Trem2 extracellular domain (19-131) in complex with single-chain variable 4 (scfv-4)
PDB DOI: 10.2210/pdb6ymq/pdb
Classification: IMMUNE SYSTEM Organism(s): Homo Sapiens
Deposited: 2020-04-09 Deposition Author(s): Arrowsmith, C.H. , Bountra, C. , Bullock, A. , Burgess-Brown, N. , Davis, J.B. , Di Daniel, E. , Edwards, A. , Graslund, S. , Mckinley, G. , Mukhopadhyay, S.M.M. , Persson, H. , Preger, C. , Scacioc, A. , Szykowska, A. , Von Delft, F. , Wigren, E.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.07 Å
Trem2 extracellular domain (19-131) in complex with single-chain variable 4 (scfv-4)
Arrowsmith, C.H. , Bountra, C. , Bullock, A. , Burgess-Brown, N. , Davis, J.B. , Di Daniel, E. , Edwards, A. , Graslund, S. , Mckinley, G. , Mukhopadhyay, S.M.M. , Persson, H. , Preger, C. , Scacioc, A. , Szykowska, A. , Von Delft, F. , Wigren, E.
Primary Citation of Related Structures: 6YMQ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Single-chain variable 4 | A | 245 | Homo Sapiens | SMEVQLLESGGGLVQPGGSLRLSCAASGFTFSYYYMGWVRQAPGKGLEWVSGISPSSGYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYYYGYYYSHMDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSRSGLHTFGQGTKLEIK |
| Single-chain variable 4 | B | 245 | Homo Sapiens | SMEVQLLESGGGLVQPGGSLRLSCAASGFTFSYYYMGWVRQAPGKGLEWVSGISPSSGYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYYYGYYYSHMDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSRSGLHTFGQGTKLEIK |
| Single-chain variable 4 | C | 245 | Homo Sapiens | SMEVQLLESGGGLVQPGGSLRLSCAASGFTFSYYYMGWVRQAPGKGLEWVSGISPSSGYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYYYGYYYSHMDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSRSGLHTFGQGTKLEIK |
| Single-chain variable 4 | D | 245 | Homo Sapiens | SMEVQLLESGGGLVQPGGSLRLSCAASGFTFSYYYMGWVRQAPGKGLEWVSGISPSSGYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYYYGYYYSHMDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSRSGLHTFGQGTKLEIK |
| Single-chain variable 4 | E | 245 | Homo Sapiens | SMEVQLLESGGGLVQPGGSLRLSCAASGFTFSYYYMGWVRQAPGKGLEWVSGISPSSGYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYYYGYYYSHMDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSRSGLHTFGQGTKLEIK |
| Single-chain variable 4 | F | 245 | Homo Sapiens | SMEVQLLESGGGLVQPGGSLRLSCAASGFTFSYYYMGWVRQAPGKGLEWVSGISPSSGYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYYYGYYYSHMDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSRSGLHTFGQGTKLEIK |
| Triggering receptor expressed on myeloid cells 2 | G | 125 | Homo Sapiens | ETGHNTTVFQGVAGQSLQVSCPYDSMKHWGRRKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLRNLQPHDAGLYQCQSLHGSEADTLRKVLVEVLADGTKHHHHHH |
| Triggering receptor expressed on myeloid cells 2 | H | 125 | Homo Sapiens | ETGHNTTVFQGVAGQSLQVSCPYDSMKHWGRRKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLRNLQPHDAGLYQCQSLHGSEADTLRKVLVEVLADGTKHHHHHH |
| Triggering receptor expressed on myeloid cells 2 | I | 125 | Homo Sapiens | ETGHNTTVFQGVAGQSLQVSCPYDSMKHWGRRKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLRNLQPHDAGLYQCQSLHGSEADTLRKVLVEVLADGTKHHHHHH |
| Triggering receptor expressed on myeloid cells 2 | J | 125 | Homo Sapiens | ETGHNTTVFQGVAGQSLQVSCPYDSMKHWGRRKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLRNLQPHDAGLYQCQSLHGSEADTLRKVLVEVLADGTKHHHHHH |
| Triggering receptor expressed on myeloid cells 2 | K | 125 | Homo Sapiens | ETGHNTTVFQGVAGQSLQVSCPYDSMKHWGRRKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLRNLQPHDAGLYQCQSLHGSEADTLRKVLVEVLADGTKHHHHHH |
| Triggering receptor expressed on myeloid cells 2 | D000 | 125 | Homo Sapiens | ETGHNTTVFQGVAGQSLQVSCPYDSMKHWGRRKAWCRQLGEKGPCQRVVSTHNLWLLSFLRRWNGSTAITDDTLGGTLTITLRNLQPHDAGLYQCQSLHGSEADTLRKVLVEVLADGTKHHHHHH |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2020-04-09 Deposition Author(s): Arrowsmith, C.H. , Bountra, C. , Bullock, A. , Burgess-Brown, N. , Davis, J.B. , Di Daniel, E. , Edwards, A. , Graslund, S. , Mckinley, G. , Mukhopadhyay, S.M.M. , Persson, H. , Preger, C. , Scacioc, A. , Szykowska, A. , Von Delft, F. , Wigren, E.