6YMG
Vcam4i restriction endonuclease in complex with 5mc-modified dsdna
PDB DOI: 10.2210/pdb6ymg/pdb
Classification: HYDROLASE Organism(s): Synthetic Construct , Vibrio Campbellii
Deposited: 2020-04-08 Deposition Author(s): Bochtler, M. , Czapinska, H. , Helbrecht, I. , Lutz, T. , Pastor, M. , Xu, S.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.14 Å
Vcam4i restriction endonuclease in complex with 5mc-modified dsdna
Bochtler, M. , Czapinska, H. , Helbrecht, I. , Lutz, T. , Pastor, M. , Xu, S.
Primary Citation of Related Structures: 6YMG
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HNH endonuclease | A | 309 | Synthetic Construct , Vibrio Campbellii | MNYWWVSQKQTFKQEFEGGYMWSPKENKNGTQSHYYNNMTLVQPGDVVFSFANGLILSVGIARSHAYSYNKPTEFGVAGADWANDGWKIDLEYHLVENKIRPKAHIDFIRPYLPQKYSPLQDNGNGNQAYLFSVPHELASKVVELIGSEAEEVIFGFADTTEITTTADAIECQISNDASIDETEKHQLVKSRRGQGIFRSRLEQVESRCRVTGVQLKNHLIASHIKPWAVSNNQERLDGHNGLLLAPHVDHLFDKGFISFEDNGEMIVSEKLNLDVLKAWSISQGNYGYFSKQQQEYMCYHRENVFKKL |
| HNH endonuclease | B | 309 | Synthetic Construct , Vibrio Campbellii | MNYWWVSQKQTFKQEFEGGYMWSPKENKNGTQSHYYNNMTLVQPGDVVFSFANGLILSVGIARSHAYSYNKPTEFGVAGADWANDGWKIDLEYHLVENKIRPKAHIDFIRPYLPQKYSPLQDNGNGNQAYLFSVPHELASKVVELIGSEAEEVIFGFADTTEITTTADAIECQISNDASIDETEKHQLVKSRRGQGIFRSRLEQVESRCRVTGVQLKNHLIASHIKPWAVSNNQERLDGHNGLLLAPHVDHLFDKGFISFEDNGEMIVSEKLNLDVLKAWSISQGNYGYFSKQQQEYMCYHRENVFKKL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*A)-3') | c | 11 | NA | CCATGCGCTGA |
| DNA (5'-D(*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*A)-3') | e | 11 | NA | CCATGCGCTGA |
| DNA (5'-D(P*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3') | d | 11 | NA | TCAGCGCATGG |
| DNA (5'-D(P*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3') | f | 11 | NA | TCAGCGCATGG |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2020-04-08 Deposition Author(s): Bochtler, M. , Czapinska, H. , Helbrecht, I. , Lutz, T. , Pastor, M. , Xu, S.