6YJ4
Structure of yarrowia lipolytica complex i at 2.7 a
PDB DOI: 10.2210/pdb6yj4/pdb
Classification: MEMBRANE PROTEIN Organism(s): Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150)
Deposited: 2020-04-02 Deposition Author(s): Grba, D. , Hirst, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.7 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Subunit NIMM of NADH:Ubiquinone Oxidoreductase (Complex I) | A | 87 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MAIPFEALLPYGIIFGLLTAGGGAMQVLHVYRNGGVRDRFAIDQWDSQMMERDLRLNGGQGRKQVDQATAPEAFKHNHVWKSERPLI |
| subunit NIGM of protein NADH:Ubiquinone Oxidoreductase (Complex I) | J | 91 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MHNSSSVHHHYISKTTGFFRFRYKMAGHHTNYKWNGPLPRPHVSAGHRIATKFLGATMFFWMFLRIKEEYPAMLGLHNFYPPKEGEKAVEH |
| Subunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I) | K | 60 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MAPQLKDPWARREAWRYQTNFTRANRFKGAAPGFGIAVVAFGAYLAAEKFLFEKKDDHHH |
| Subunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I) | L | 149 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLSRRAVTMLRSPVARVAQVQVRGIRASFDKAEEPMLGDYPDIDPFPAQLKNPYKKYDDQQDRRNLEEPLSVNDDLYDMWSPDRFTHFKNQDALKYFIGFLTIFFGASYVATYFVPEKAAIPREFPYEGLWKESGGTEKSKAFFGQRSE |
| Subunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I) | M | 93 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MVELKPSSAIQRGPLNKGGWDAPHALHNDGAIDRYAHWRTFYQERFKYTRATGKSTLIFLVAFPALIGYVAYQSEGLFEFAGKRRGESVTTRG |
| Subunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I) | N | 109 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MSHPVPFSAANKKLVTSMYRQSLKLARNWISNRQLFRQKAVEIRHKFDQNAQISNPRLLARTLDETRAHLYEFRHPDPIVPPSFPGGTKYERNVPPRMEKIMQHNLYEP |
| Subunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I) | O | 99 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MAEFPPLLSQEDMKKHKILLAYRDRCAALLVPLNECRKKNYYMPWACGHERHEYEMCEVADFQRRVKAMDKLKAEKIEQAKAAAAAAAAAAAADAEESK |
| Subunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I) | P | 92 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MSEHQRPELVSFDDINYNDHKKVREAQESYTREQFIRLEALKTVRKALEKCYEESGPNHFEDCKNLAEQYLDMLPTHRLQGYLGYQRNDPSK |
| Subunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I) | Q | 161 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLSRSLRQLSQPSVRSFATSARLLQKKDVPEVGVNLDNVPAHEIVSGAPAELSRNRVVRIYQQAKPATQSGEYGTFAWRLDWDIVDVANRWENDLIGWQSSGDYMQATQMKFTSKESAIKFANKQGWDFYIQEPHHRKFRVKQYANNFVHSYGKLKHIRTK |
| Subunit NUMM of protein NADH:Ubiquinone Oxidoreductase (Complex I) | R | 136 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLSRFVSKRAFSVSTQVSKSIISYNGNTIEIPEEYTKQAPNRDSTWAPAQASKTEIYKNNMVRFEQKDLSKQPMPYAGIELIAQQPVRFVHGNTAVCDGANHNGPGAQGHPKIFINVDAPGSHACQYCGTRYEKEH |
| Subunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I) | S | 87 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MSAALREIRFHLCQNGSSSAPLRQFVKNQIGAFQKANPSTKVLVREANGVKPIVFARFDHGHESKIGLDVSSEKEVAERVKSLIEAK |
| subunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I) | B | 78 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MINANPGFWNGPFRYLRWSAHNRPHLFFAFAIGIAGPVAALTLTPLRRKYLYPDHSPLPQSYPLPQRAREQLTGFDDE |
| Acyl carrier protein ACPM1 of NADH:Ubiquinone Oxidoreductase (Complex I) | T | 109 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLRNVSRLALRSNFARQATMGQRFYSVARPDAEKRIAAVLESFDKISNPAAITPTASFAKDLNLDSLDTVEVVVAIEEEFGIEIPDKEADEIKSVNQAVEYILAQPDAK |
| Acyl carrier protein ACPM2 of NADH:Ubiquinone Oxidoreductase (Complex I) | U | 132 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLRQSVLRLSRAAVARPALSRSFVTAVARPQLVRAAPVSFIRHYSSAHVLTKDMIQERIVALLESFDKVNDAKNITATANLTSDLGLDSLDVVEVVMAIEEEFGLEIPDHDADEIKTVQQAIDYVSAQPAAV |
| Subunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I) | V | 144 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MRYTQLLRNVSKGVQKSGQSVLVQMREGTPIGLTGIYQHPNPRPALIALYEATLKELQDKHPKDSVYRQSIENLTAHRKQIVEDNEVSEVIENKIGAGLIEEVVIQAHEELELAKKMSEWKPWEELEEKPLEDQWVYFNKKGVE |
| Subunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I) | W | 124 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MAIIATAFAETVKFSGSKQELQKRTLALYRQFLRGAPTFADLYEVQFSIPTIRTKIRQEFERHRFVDDLSIQNVLYAKGHMEYQECINFWKQQAQFLKYFPEEDDIQGRHQPSNFVDKFLKNRA |
| Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I) | X | 172 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MPREAAAHWVPFEDKANMPDNVPDVVEVGATSAPLLSASYFIGAKCKPYNDDFMLCREESQGSGAIDCLKEGRRVTRCAVSVIEDINKSCLDEFRLHWQCLEQNNHQLSGCRKAEALLNKCVFTKLNLEKKIPGLRPDEEPVFLKKDPWIKPAVDDFKSVRAYAEAKKNGTL |
| Subunit NUJM of NADH:Ubiquinone Oxidoreductase (Complex I) | Y | 198 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MSEHVHLPSPTFNTSSAGHFHPYNTLGLATQSAMVGLGAGVVAAAARNSLATGPRNILTTFSKSGGVVTIFTGASIAYVFTYCSAANLRERKDGWNHMWAGAATGAVLGARTKLVPAFIGWTVLCGAACGLFGWTGARFNADRKASLEQSPKGFVQEDAHQTFWEVVHRRPLSLTVEQLGEGRGINAVPIATATEAPN |
| Subunit NB6M of NADH:Ubiquinone Oxidoreductase (Complex I) | Z | 123 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MPSVGQDLPPVGGYEPVQWRRNLPARGFRPLVYLAALCGICGYGFYRALGGIQERRELKREKLWARIYLMPLLQAEEDRQTVRRSIAQLEREKEIMKGTGFDVDKSVYNDGKFHAPALMIPPK |
| NUGM protein | C | 293 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLSRFARIGSMGIRPVAAARATFVTSARAAQAAPSWENIKDIRLDPKVHVDEVYEPIVNPADRYLQHVSDLHQYAKYIMAALPKYIQGFSVWKDELTLHVAPSAVIPVTTFLRDNTSTQYKSIIDITAVDYPSRENRFEVVYNFLSVRHNSRIRLKTYATEVTPVPSITCLYEGANWFEREAYDMYGVFFEGHPDLRRIMTDYGFEGHPLRKDFPLTGYTEVRWDEEKRRVVYEPLELTQAFRNFSAGSTAWEPVGPGRDDRPDSFKLPTPKPEEKEGDKKAAAAAAHHHHHH |
| NUCM protein | D | 466 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLRSAAARAVRAVRPRLSARYMATTALPQDPIPSGALGQKVPHVDESHQDLLFRTSHMVEDLETYDEDSPINTSDANTRIRAFTINFGPQHPAAHGVLRLILELSGEEIIRSDPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQVFSLAVEKLLNVEVPLRGKYIRTMFGEITRVLNHLMSVCSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPAGLLDDIYMWATQFGDRLDEIEELLTDNRIWKLRTVNIGTVTAQDALNLGLSGPMLRGSGIPFDIRKNAPYDAYDKVDFDVPVGMNGDCYDRYLIRMAEFRQSLRIIEQCCNDMPAGAVKVEDFKINSPPRNLMKEDMEALIHHFLLYTKGYSVPPGETYTAIEAPKGEMGVYVVSDGSERPYKCKIRAPGFAHLGAFDHIARGHFLPDAVAIIGTMDLVFGEVDR |
| Subunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I) | E | 243 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLRLIRPRLAALARPTTRAPQALNARTHIVSVHRNTENNNPSIPFEFSPENMKRAEEVIAKYPPQYKKAAVMPLLDIGQRQLGYTSISVMNYVAKLLEMPPMRVYEVATFYTMYNRTPMGRYHLQICTTTPCQLCGSDGIMEAVQNTLNIKPGETTKDNLFTLSEVECLGACVNAPMMAINDDYYEDLTPEGTVKLLEDCKAGKMPTPGPENHVRRDCEPASGQKVLLSKEPHNVADFLQEGI |
| Subunit NUBM of NADH:Ubiquinone Oxidoreductase (Complex I) | F | 488 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLRTTLHKRGLARLSRGFATTQDATPKARQYGGLKDQDRIFQNLYDNYGWDLASARKQGDWYKTKELILKGDTWIIDEIKKSGLRGRGGAGFPSGLKWSFMNPPGWEKNEGPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLLAGRAMNATAAYIYIRGEFYNEAAVLQTAINEAYAAGLIGKDACGSGYDFDVYIHRGMGAYVCGEETSLIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRERNSGTKLFCISGNVNEPCTVEEEMSIPLRELLEKHCGGIKGGWDNLLGVIPGGCSVPILPKNICEDVLMDFDALKDVQSGLGTAAVIVINKQQDVIRAIQRFAAFYKHESCGQCTPCREGTTWLLKAMDRFRTGQAKEREIDMLYELTKDIEGHTICALGDAAAWPIQGLIRNFRPEMETRMKKFHDEVGAVSVGGWMKDARVEKGKVVGAPLPGVHH |
| Subunit NUAM of NADH:Ubiquinone Oxidoreductase (Complex I) | G | 728 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLSRNLSKFARAGLIRPATTSTHTRLFSVSARRLAEIELTIDGHKVSIEAGSALIQACEKAGVTVPRYCYHDKLAIAGNCRMCLVDVERAPKPVASCAYPVAPGMVVRTDTERVKQARENVMEMMLQNHPLDCPVCDQGGECDLQDQSMRYGRDRGRFTEITGKRSTEDKNIGPLVKTSMNRCIHCTRCVRFANDIAGAPELGSSGRGNDMQIGTYLEKNLNTELSGNVIDLCPVGALTNKPYAFRARPWELKKTESIDVMDAVGSNIRIDSKGVEVMRVIPRVHEDVNEEWINDKSRFACDGLKTQRLTTPLIRVGDKFVNATWDDALSTIAKAYQQKAPKGDEFKAVAGALVEVESMVALKDMTNALGSENTTTDTPNGNSAPAHGITFRSNYLFNSSIAGIEDADAILLVGTNPRREAAVMNARIRKAWLRQELEIASVGPTLDATFDVAELGNTHADLEKALSGEFGEVLKNAKNPLIIVGSGITDREDAGAFFNTIGKFVESTPSVLNENWNGYNVLQRSASRAGAYDIGFTPSDEASKTTPKMVWLLGADEVAASDIPADAFVVYQGHNGDVGAQFADVVLPGAAYTEKAGTYVNTEGRSQISRAATGPPGGAREDWKILRAVSEYLGVALPYEDAYEVRDRLAEISPSLVRYDLVEPTVFGDVAVQHSLVGPNGSVTPSSAPLTETIENFYMTDSISRSSPTMAKSSIAFNKDNKKNQAFA |
| NADH-ubiquinone oxidoreductase chain 1 | H | 341 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MIINIVEILIFLVCVLFSVAYLTVAERKTLAYMQRRLGPNFVGYYGLLQAFADAVKLLLKEIVLPKESNYIILVISPLITLITALIGWVVIPLGPGITLGELNLGILFSLAIGSLGVFGSLLSGWSSNSKYSLLGSIRSTAQLISYELILTSIFIIIIMFVSSLNITTIIETQRVVWYCIPLLPLLLIFFIASVAETARPPFDLTESESELVAGYFTEYSGSPFVFFFLAEYSNIILISAFNGYLLLGGYLSFNYSYLFNILFNDYSYVSFLFEGLINSSAYAIKLVFLMFSFIWVRAAFPRFTYDNLINFCWIILLPLLFGIFLIIPSTLYIFDSFPTLI |
| Subunit NUIM of NADH:Ubiquinone Oxidoreductase (Complex I) | I | 229 | Yarrowia Lipolytica , Yarrowia Lipolytica (Strain Clib 122 / E 150) | MLSLVRPAVTRSILRGAPGSMRLLSSTARLHAPATDSAINIYAGGSAAAAPPAGFRIHRPATWEESEEGALSKATKYFLLAEMFRGLYVVLEQFFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERCIACKLCEAICPALAITIDAEERIDGSRRTTKYDIDMTKCIYCGYCQESCPVDAIVETPNVEYATETREELLYNKEKLLANGDKWELELQYALDADAPYR |
Experimental Data
Method: ELECTRON MICROSCOPY