70s initiation complex with assigned rrna modifications from staphylococcus aureus
PDB DOI: 10.2210/pdb6yef/pdb
Classification: RIBOSOME
Organism(s): Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct
Deposited: 2020-03-24
Deposition Author(s): Fatkhullin, B. , Golubev, A. , Khusainov, I. , Yusupov, M. , Yusupova, G.
70s initiation complex with assigned rrna modifications from staphylococcus aureus
Fatkhullin, B. , Golubev, A. , Khusainov, I. , Yusupov, M. , Yusupova, G.
Primary Citation of Related Structures: 6YEF
Nucleic Acids / Hybrid | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
23S rRNA | a | 2923 | NA | GAUUAAGUUAUUAAGGGCGCACGGUGGAUGCCUUGGCACUAGAAGCCGAUGAAGGACGUUACUAACGACGAUAUGCUUUGGGGAGCUGUAAGUAAGCUUUGAUCCAGAGAUUUCCGAAUGGGGAAACCCAGCAUGAGUUAUGUCAUGUUAUCGAUAUGUGAAUACAUAGCAUAUCAGAAGGCACACCCGGAGAACUGAAACAUCUUAGUACCCGGAGGAAGAGAAAGAAAAUUCGAUUCCCUUAGUAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCUUGCUUGUUGGGGUUGUAGGACACUCUAUACGGAGUUACAAAGGACGACAUUAGACGAAUCAUCUGGAAAGAUGAAUCAAAGAAGGUAAUAAUCCUGUAGUCGAAAAUGUUGUCUCUCUUGAGUGGAUCCUGAGUACGACGGAGCACGUGAAAUUCCGUCGGAAUCUGGGAGGACCAUCUCCUAAGGCUAAAUACUCUCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAUAGAACCUGAAACCGUGUGCUUACAAGUAGUCAGAGCCCGUUAAUGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUUGAUGCAAGGUUAAGCAGUAAAUGUGGAGCCGUAGCGAAAGCGAGUCUGAAUAGGGCGUUUAGUAUUUGGUCGUAGACCCGAAACCAGGUGAUCUACCCUUGGUCAGGUUGAAGUUCAGGUAACACUGAAUGGAGGACCGAACCGACUUACGUUGAAAAGUGAGCGGAUGAACUGAGGGUAGCGGAGAAAUUCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGUGAUGAUUAUUGGAGGUAGAGCACUGUUUGGACGAGGGGCCCCUCUCGGGUUACCGAAUUCAGACAAACUCCGAAUGCCAAUUAAUUUAACUUGGGAGUCAGAACAUGGGUGAUAAGGUCCGUGUUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGUGGCGUUGCCCAGACAACUAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAGUGACACUGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAAGCUGUGGAUUGUCCUUUGGACAAUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGCAUGAUCGUAAGGACAUGUGGAGCGCUUAGAAGUGAGAAUGCCGGUGUGAGUAGCGAAAGACGGGUGAGAAUCCCGUCCACCGAUUGACUAAGGUUUCCAGAGGAAGGCUCGUCCGCUCUGGGUUAGUCGGGUCCUAAGCUGAGGCCGACAGGCGUAGGCGAUGGAUAACAGGUUGAUAUUCCUGUACCACCUAUAAUCGUUUUAAUCGAUGGGGGGACGCAGUAGGAUAGGCGAAGCGUGCGAUUGGAUUGCACGUCUAAGCAGUAAGGCUGAGUAUUAGGCAAAUCCGGUACUCGUUAAGGCUGAGCUGUGAUGGGGAGAAGACAUUGUGUCUUCGAGUCGUUGAUUUCACACUGCCGAGAAAAGCCUCUAGAUAGAAAAUAGGUGCCCGUACCGCAAACCGACACAGGUAGUCAAGAUGAGAAUUCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUUUAGGGUUAACGCCCAGAAGAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCUAAACCGUAAGGUGAUGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGUGGUUAGCUUCUGCGAAGCUACGAAUCGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUUUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUCAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGUAGCCUGAUAUUGAAAUUCGGCACAGCUUGUACAGGAUAGGUAGGAGCCUUUGAAACGUGAGCGCUAGCUUACGUGGAGGCGCUGGUGGGAUACUACCCUAGCUGUGUUGGCUUUCUAACCCGCACCACUUAUCGUGGUGGGAGACAGUGUCAGGCGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCUCAAAGGUUCCCUCAGAAUGGUUGGAAAUCAUUCAUAGAGUGUAAAGGCAUAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGUCGAAAGACGGACUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCCGGGGAUAACAGGCUUAUCUCCCCCAAGAGUUCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGUGGGCGUAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACAUACCUCUGGUGUACCAGUUGUCGUGCCAACGGCAUAGCUGGGUAGCUAUGUGUGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAACUUCGGUUAUAAGAUCCCUCAAAGAUGAUGAGGUUAAUAGGUUCGAGGUGGAAGCAUGGUGACAUGUGGAGCUGACGAAUACUAAUCGAUCGAAGACUUAAUCAA |
5S rRNA | b | 115 | NA | UCUGGUGACUAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGCUCCUUAGCGUCGAUGGUAGUCGAACUUACGUUCCGCUAGAGUAGAACGUUGCCAGGC |
P-site tRNA | x | 77 | NA | CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCX |
Proteins | ||||
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Molecule | Chains | Sequence Length | Organism | Sequence |
ribosomal protein uS10 | J | 102 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHKYKDSREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL |
30S ribosomal protein S11 | K | 129 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV |
30S ribosomal protein S12 | L | 137 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MPTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGVDGRRQGRSLYGTKKPKN |
50S ribosomal protein L13 | M | 145 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG |
50S ribosomal protein L14 | N | 122 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKNATPGGVVKKGDVVKAVIVRTKSGVRRNDGSYIKFDENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPEVL |
50S ribosomal protein L15 | O | 146 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MKLHELKPAEGSRKERNRVGRGVATGNGKTSGRGHKGQKARSGGGVRPGFEGGQLPLFRRLPKRGFTNINRKEYAIVNLDQLNKFEDGTEVTPALLVESGVVKNEKSGIKILGNGSLDKKLTVKAHKFSASAAEAIDAKGGAHEVI |
50S ribosomal protein L16 | P | 144 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITSRQIESARIAMTRYMKRGGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEVAGVSEEVAREALRLASHKLPVKTKFVKREELGGETNES |
50S ribosomal protein L17 | Q | 122 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV |
50S ribosomal protein L18 | R | 119 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MISKIDKNKVRLKRHARVRTNLSGTAEKPRLNVYRSNKHIYAQIIDDNKGVTLAQASSKDSDIATTATKVELATKVGEAIAKKAADKGIKEIVFDRGGYLYHGRVKALAEAARESGLEF |
50S ribosomal protein L19 | S | 116 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MTNHKLIEAVTKSQLRTDLPSFRPGDTLRVHVRIIEGTRERIQVFEGVVIKRRGGGVSETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR |
50S ribosomal protein L20 | T | 118 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MPRVKGGTVTRARRKKTIKLAKGYFGSKHTLYKVAKQQVMKSGQYAFRDRRQRKRDFRKLWITRINAAARQHEMSYSRLMNGLKKAGIDINRKMLSEIAISDEKAFAQLVTKAKDALK |
50S ribosomal protein L22 | V | 117 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MEAKAVARTIRIAPRKVRLVLDLIRGKNAAEAIAILKLTNKASSPVIEKVLMSALANAEHNYDMNTDELVVKEAYANEGPTLKRFRPRAQGRASAINKRTSHITIVVSDGKEEAKEA |
30S ribosomal protein S4 | D | 200 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRYLYGMTERQFRNTFDIAGKKFGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGHILVDGKRVDIPSYSVKPGQTISVREKSQKLNIIVESVEINNFVPEYLNFDADSLTGTFVRLPERSELPAEINEQLIVEYYSR |
30S ribosomal protein S5 | E | 166 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPRVEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRGKTVEELYN |
30S ribosomal protein S6 | F | 98 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MRTYEVMYIVRPNIEEDAKKALVERFNGILATEGAEVLEAKDWGKRRLAYEINDFKDGFYNIVRVKSDNNKATDEFQRLAKISDDIIRYMVIREDEDK |
30S ribosomal protein S7 | G | 156 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MPRKGSVPKRDVLPDPIHNSKLVTKLINKIMLDGKRGTAQRILYSAFDLVEQRSGRDALEVFEEAINNIMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEDRLANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW |
30S ribosomal protein S8 | H | 132 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVLRLFLKYGQNDERVITGLKRISKPGLRVYAKASEMPKVLNGLGIALVSTSEGVITDKEARKRNVGGEIIAYVW |
30S ribosomal protein S3 | C | 217 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MGQKINPIGLRVGIIRDWEAKWYAEKDFASLLHEDLKIRKFIDNELKEASVSHVEIERAANRINIAIHTGKPGMVIGKGGSEIEKLRNKLNALTDKKVHINVIEIKKVDLDARLVAENIARQLENRASFRRVQKQAITRAMKLGAKGIKTQVSGRLGGADIARAEQYSEGTVPLHTLRADIDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSGGGK |
50S ribosomal protein L21 | U | 102 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MFAIIETGGKQIKVEEGQEIFVEKLDVNEGDTFTFDKVLFVGGDSVKVGAPTVEGATVTATVNKQGRGKKITVFTYKRRKNSKRKKGHRQPYTKLTIDKINA |
50S ribosomal protein L23 | W | 91 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MEARDILKRPVITEKSSEAMAEDKYTFDVDTRVNKTQVKMAVEEIFNVKVASVNIMNYKPKKKRMGRYQGYTNKRRKAIVTLKEGSIDLFN |
50S ribosomal protein L25 | Y | 217 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIENDSAESVVTVVAPTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE |
50S ribosomal protein L27 | Z | 94 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MLKLNLQFFASKKGVSSTKNGRDSESKRLGAKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGVVKFERKGRDKKQVSVYAVAE |
50S ribosomal protein L28 | 0 | 62 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MGKQCFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV |
50S ribosomal protein L29 | 1 | 69 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIEQSKANQ |
50S ribosomal protein L30 | 2 | 59 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLVTVEEK |
50S ribosomal protein L31 type B | 3 | 84 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MKQGIHPEYHQVIFLDTTTNFKFLSGSTKTSSEMMEWEDGKEYPVIRLDISSDSHPFYTGRQKFAAADGRVERFNKKFGLKSNN |
50S ribosomal protein L32 | 4 | 58 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MAVPKRRTSKTRKNKRRTHFKISVPGMTECPNCGREYKLSHRVCKNCGSYNGEEVAAK |
50S ribosomal protein L33 2 | 5 | 49 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MRVNVTLACTECGDRNYITTKNKRNNPERVEMKKFCSRENKQTLHRETK |
50S ribosomal protein L34 | 6 | 45 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA |
50S ribosomal protein L35 | 7 | 66 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MPKMKTHRGAAKRVKRTASGQLKRSRAFTSHLFANKSTKQKRQLRKARLVSKSDMKRVKQLLAYKK |
50S ribosomal protein L36 | 8 | 37 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MKVRPSVKPICEKCKVIKRKGKVMVICENPKHKQRQG |
30S ribosomal protein S9 | I | 132 | Escherichia Coli Dh5[Alpha] , Staphylococcus Aureus (Strain Nctc 8325) , Staphylococcus Aureus Subsp. Aureus Nctc 8325 , Synthetic Construct | MTLAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR |
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-03-24
Deposition Author(s): Fatkhullin, B. , Golubev, A. , Khusainov, I. , Yusupov, M. , Yusupova, G.