6Y9H
Thrombin in complex with d-phe-pro-m-trifluoromethylbenzylamide derivative (phe2)
PDB DOI: 10.2210/pdb6y9h/pdb
Classification: HYDROLASE Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2020-03-09 Deposition Author(s): Abazi, N. , Heine, A. , Klebe, G. , Sandner, A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.48 Å
Thrombin in complex with d-phe-pro-m-trifluoromethylbenzylamide derivative (phe2)
Abazi, N. , Heine, A. , Klebe, G. , Sandner, A.
Primary Citation of Related Structures: 6Y9H
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Prothrombin | L | 36 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR |
| Prothrombin | H | 259 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE |
| Hirudin variant-2 | I | 12 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | GDFEEIPEEYLQ |
| D-Phe-Pro-m-Trifluoromethylbenzylamide derivative (phe2) | C | 3 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | FPX |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2020-03-09 Deposition Author(s): Abazi, N. , Heine, A. , Klebe, G. , Sandner, A.