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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6Y6A

Structure of finch polyomavirus vp1 in complex with 2-o-methyl-5-n-acetyl-alpha-d-neuraminic acid

PDB DOI: 10.2210/pdb6y6a/pdb

Classification: VIRAL PROTEIN
Organism(s): Finch Polyomavirus

Deposited: 2020-02-26
Deposition Author(s): Rustmeier, N.H. , Stehle, T. , Stroh, L.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å

6y6a
Literature

Structure of finch polyomavirus vp1 in complex with 2-o-methyl-5-n-acetyl-alpha-d-neuraminic acid

Rustmeier, N.H. , Stehle, T. , Stroh, L.J.

Primary Citation of Related Structures: 6Y6A


Proteins
Molecule Chains Sequence Length Organism Sequence
Capsid protein VP1 A 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 B 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 C 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 D 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 E 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 F 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 G 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 H 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 I 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 J 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 K 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 L 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 M 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 N 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 O 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 P 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 Q 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 R 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 S 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 T 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 U 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 V 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 W 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 X 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 Y 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 Z 274 Finch Polyomavirus GSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-02-26
Deposition Author(s): Rustmeier, N.H. , Stehle, T. , Stroh, L.J.