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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6Y67

Structure of apo finch polyomavirus vp1

PDB DOI: 10.2210/pdb6y67/pdb

Classification: VIRAL PROTEIN
Organism(s): Finch Polyomavirus

Deposited: 2020-02-26
Deposition Author(s): Rustmeier, N.H. , Stehle, T. , Stroh, L.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.618 Å

6y67
Literature

Structure of apo finch polyomavirus vp1

Rustmeier, N.H. , Stehle, T. , Stroh, L.J.

Primary Citation of Related Structures: 6Y67


Proteins
Molecule Chains Sequence Length Organism Sequence
Capsid protein VP1 AAA 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 BBB 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 CCC 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 DDD 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 EEE 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 FFF 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 GGG 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 HHH 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 III 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 JJJ 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 KKK 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 LLL 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 MMM 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 NNN 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 OOO 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 PPP 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 QQQ 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 RRR 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 SSS 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 TTT 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 UUU 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 VVV 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 WWW 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 XXX 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 YYY 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Capsid protein VP1 ZZZ 293 Finch Polyomavirus MGSSHHHHHHSSGENLYFQGSHMGGIEVLDVKTGPDSTTTIEAYLNPRVGQNWGFSTEITVASNGYNDAPHLTEIPCYSSARISLPLLNEDITSPTLLMWEAVSVKTEVVGISSMLNMHSYGLRAFGGYGGGYTIEGSHIHFFSVGGEPLDLQGLMQNHSTQYPSPLVGPKKPDGTTDDSAQVLNPIYKAKLDKDATYPIECWCPDPSRNENSRYFGSYTGGVETPPVLSFTNTSTTILLDENGVGPLCKGDGLYLSSADVAGTFVQQTSQKQYWRGLPRYFNITLRKRAVKN
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-02-26
Deposition Author(s): Rustmeier, N.H. , Stehle, T. , Stroh, L.J.