PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6Y66

Structure of goose hemorrhagic polyomavirus vp1 in complex with 2-o-methyl-5-n-acetyl-alpha-d-neuraminic acid

PDB DOI: 10.2210/pdb6y66/pdb

Classification: VIRAL PROTEIN
Organism(s): Goose Hemorrhagic Polyomavirus

Deposited: 2020-02-26
Deposition Author(s): Rustmeier, N.H. , Stehle, T. , Stroh, L.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å

6y66
Literature

Structure of goose hemorrhagic polyomavirus vp1 in complex with 2-o-methyl-5-n-acetyl-alpha-d-neuraminic acid

Rustmeier, N.H. , Stehle, T. , Stroh, L.J.

Primary Citation of Related Structures: 6Y66


Proteins
Molecule Chains Sequence Length Organism Sequence
Capsid protein VP1 AAA 287 Goose Hemorrhagic Polyomavirus MGSSHHHHHHSSGLVPRGSHMGGIEVLGVRTGPDSTTTIEAYLNPRMGTDNGFSQAVTVATSLNPDVPPKAELPCYSCARIGLPMLNEDMTTPEILMWEAVSVKTEVVGVTTMCNVHSASIRMNGGYGVGRPIEGLNCHMFAVGGEPLELQGCVQNWSTTYPSGVVAPPLKDAKAQVLDPGLKARLDKDGAYPVECWCPDPSRNENTRYFGTYTGGQQTPPVLPFTNTVTTVLLDENGVGPLCKGDGLYLSCVDICGFYSEQYSQKQHFRGLPRYFSVSLRKRLVRN
Capsid protein VP1 BBB 287 Goose Hemorrhagic Polyomavirus MGSSHHHHHHSSGLVPRGSHMGGIEVLGVRTGPDSTTTIEAYLNPRMGTDNGFSQAVTVATSLNPDVPPKAELPCYSCARIGLPMLNEDMTTPEILMWEAVSVKTEVVGVTTMCNVHSASIRMNGGYGVGRPIEGLNCHMFAVGGEPLELQGCVQNWSTTYPSGVVAPPLKDAKAQVLDPGLKARLDKDGAYPVECWCPDPSRNENTRYFGTYTGGQQTPPVLPFTNTVTTVLLDENGVGPLCKGDGLYLSCVDICGFYSEQYSQKQHFRGLPRYFSVSLRKRLVRN
Capsid protein VP1 CCC 287 Goose Hemorrhagic Polyomavirus MGSSHHHHHHSSGLVPRGSHMGGIEVLGVRTGPDSTTTIEAYLNPRMGTDNGFSQAVTVATSLNPDVPPKAELPCYSCARIGLPMLNEDMTTPEILMWEAVSVKTEVVGVTTMCNVHSASIRMNGGYGVGRPIEGLNCHMFAVGGEPLELQGCVQNWSTTYPSGVVAPPLKDAKAQVLDPGLKARLDKDGAYPVECWCPDPSRNENTRYFGTYTGGQQTPPVLPFTNTVTTVLLDENGVGPLCKGDGLYLSCVDICGFYSEQYSQKQHFRGLPRYFSVSLRKRLVRN
Capsid protein VP1 DDD 287 Goose Hemorrhagic Polyomavirus MGSSHHHHHHSSGLVPRGSHMGGIEVLGVRTGPDSTTTIEAYLNPRMGTDNGFSQAVTVATSLNPDVPPKAELPCYSCARIGLPMLNEDMTTPEILMWEAVSVKTEVVGVTTMCNVHSASIRMNGGYGVGRPIEGLNCHMFAVGGEPLELQGCVQNWSTTYPSGVVAPPLKDAKAQVLDPGLKARLDKDGAYPVECWCPDPSRNENTRYFGTYTGGQQTPPVLPFTNTVTTVLLDENGVGPLCKGDGLYLSCVDICGFYSEQYSQKQHFRGLPRYFSVSLRKRLVRN
Capsid protein VP1 EEE 287 Goose Hemorrhagic Polyomavirus MGSSHHHHHHSSGLVPRGSHMGGIEVLGVRTGPDSTTTIEAYLNPRMGTDNGFSQAVTVATSLNPDVPPKAELPCYSCARIGLPMLNEDMTTPEILMWEAVSVKTEVVGVTTMCNVHSASIRMNGGYGVGRPIEGLNCHMFAVGGEPLELQGCVQNWSTTYPSGVVAPPLKDAKAQVLDPGLKARLDKDGAYPVECWCPDPSRNENTRYFGTYTGGQQTPPVLPFTNTVTTVLLDENGVGPLCKGDGLYLSCVDICGFYSEQYSQKQHFRGLPRYFSVSLRKRLVRN
Capsid protein VP1 FFF 287 Goose Hemorrhagic Polyomavirus MGSSHHHHHHSSGLVPRGSHMGGIEVLGVRTGPDSTTTIEAYLNPRMGTDNGFSQAVTVATSLNPDVPPKAELPCYSCARIGLPMLNEDMTTPEILMWEAVSVKTEVVGVTTMCNVHSASIRMNGGYGVGRPIEGLNCHMFAVGGEPLELQGCVQNWSTTYPSGVVAPPLKDAKAQVLDPGLKARLDKDGAYPVECWCPDPSRNENTRYFGTYTGGQQTPPVLPFTNTVTTVLLDENGVGPLCKGDGLYLSCVDICGFYSEQYSQKQHFRGLPRYFSVSLRKRLVRN
Capsid protein VP1 GGG 287 Goose Hemorrhagic Polyomavirus MGSSHHHHHHSSGLVPRGSHMGGIEVLGVRTGPDSTTTIEAYLNPRMGTDNGFSQAVTVATSLNPDVPPKAELPCYSCARIGLPMLNEDMTTPEILMWEAVSVKTEVVGVTTMCNVHSASIRMNGGYGVGRPIEGLNCHMFAVGGEPLELQGCVQNWSTTYPSGVVAPPLKDAKAQVLDPGLKARLDKDGAYPVECWCPDPSRNENTRYFGTYTGGQQTPPVLPFTNTVTTVLLDENGVGPLCKGDGLYLSCVDICGFYSEQYSQKQHFRGLPRYFSVSLRKRLVRN
Capsid protein VP1 HHH 287 Goose Hemorrhagic Polyomavirus MGSSHHHHHHSSGLVPRGSHMGGIEVLGVRTGPDSTTTIEAYLNPRMGTDNGFSQAVTVATSLNPDVPPKAELPCYSCARIGLPMLNEDMTTPEILMWEAVSVKTEVVGVTTMCNVHSASIRMNGGYGVGRPIEGLNCHMFAVGGEPLELQGCVQNWSTTYPSGVVAPPLKDAKAQVLDPGLKARLDKDGAYPVECWCPDPSRNENTRYFGTYTGGQQTPPVLPFTNTVTTVLLDENGVGPLCKGDGLYLSCVDICGFYSEQYSQKQHFRGLPRYFSVSLRKRLVRN
Capsid protein VP1 III 287 Goose Hemorrhagic Polyomavirus MGSSHHHHHHSSGLVPRGSHMGGIEVLGVRTGPDSTTTIEAYLNPRMGTDNGFSQAVTVATSLNPDVPPKAELPCYSCARIGLPMLNEDMTTPEILMWEAVSVKTEVVGVTTMCNVHSASIRMNGGYGVGRPIEGLNCHMFAVGGEPLELQGCVQNWSTTYPSGVVAPPLKDAKAQVLDPGLKARLDKDGAYPVECWCPDPSRNENTRYFGTYTGGQQTPPVLPFTNTVTTVLLDENGVGPLCKGDGLYLSCVDICGFYSEQYSQKQHFRGLPRYFSVSLRKRLVRN
Capsid protein VP1 JJJ 287 Goose Hemorrhagic Polyomavirus MGSSHHHHHHSSGLVPRGSHMGGIEVLGVRTGPDSTTTIEAYLNPRMGTDNGFSQAVTVATSLNPDVPPKAELPCYSCARIGLPMLNEDMTTPEILMWEAVSVKTEVVGVTTMCNVHSASIRMNGGYGVGRPIEGLNCHMFAVGGEPLELQGCVQNWSTTYPSGVVAPPLKDAKAQVLDPGLKARLDKDGAYPVECWCPDPSRNENTRYFGTYTGGQQTPPVLPFTNTVTTVLLDENGVGPLCKGDGLYLSCVDICGFYSEQYSQKQHFRGLPRYFSVSLRKRLVRN
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-02-26
Deposition Author(s): Rustmeier, N.H. , Stehle, T. , Stroh, L.J.