PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6Y5Y

Structure of new jersey polyomavirus vp1 in complex with 3'-sialyllactose

PDB DOI: 10.2210/pdb6y5y/pdb

Classification: VIRAL PROTEIN
Organism(s): New Jersey Polyomavirus-2013

Deposited: 2020-02-26
Deposition Author(s): Rustmeier, N.H. , Stehle, T. , Stroh, L.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.8 Å

6y5y
Literature

Structure of new jersey polyomavirus vp1 in complex with 3'-sialyllactose

Rustmeier, N.H. , Stehle, T. , Stroh, L.J.

Primary Citation of Related Structures: 6Y5Y


Proteins
Molecule Chains Sequence Length Organism Sequence
VP1 A 311 New Jersey Polyomavirus-2013 MGSSHHHHHHSSGLVPRGSHMLDGGVEVLNIITGPDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
VP1 B 311 New Jersey Polyomavirus-2013 MGSSHHHHHHSSGLVPRGSHMLDGGVEVLNIITGPDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
VP1 C 311 New Jersey Polyomavirus-2013 MGSSHHHHHHSSGLVPRGSHMLDGGVEVLNIITGPDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
VP1 D 311 New Jersey Polyomavirus-2013 MGSSHHHHHHSSGLVPRGSHMLDGGVEVLNIITGPDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
VP1 E 311 New Jersey Polyomavirus-2013 MGSSHHHHHHSSGLVPRGSHMLDGGVEVLNIITGPDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
VP1 F 311 New Jersey Polyomavirus-2013 MGSSHHHHHHSSGLVPRGSHMLDGGVEVLNIITGPDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
VP1 G 311 New Jersey Polyomavirus-2013 MGSSHHHHHHSSGLVPRGSHMLDGGVEVLNIITGPDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
VP1 H 311 New Jersey Polyomavirus-2013 MGSSHHHHHHSSGLVPRGSHMLDGGVEVLNIITGPDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
VP1 I 311 New Jersey Polyomavirus-2013 MGSSHHHHHHSSGLVPRGSHMLDGGVEVLNIITGPDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
VP1 J 311 New Jersey Polyomavirus-2013 MGSSHHHHHHSSGLVPRGSHMLDGGVEVLNIITGPDATTEIELWLEPRMGVNAPTGDRKEWYGYSEVIHHADGYDNNLLSVQMPQYSCARVQLPMLNTDMTCETLMMWEAVSCKTEVVGIGSLISVHLLEAKMEAGPNSDGPSRPIEGMNYHMFAVGGEPLDLQGIESNGQTKYATAIPAKSIHPNDIAKLPEEDKAQLQGLVPKAKAKLDKDGFYPVEEWSPDPSRNENSRYYGSFVGGLQTPPNLQFTNAVSTVLLDENGVGPLCKGDGLFVSCADICGVLVKADNEAIRYRGLPRYFKVTLRKRAVKN
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-02-26
Deposition Author(s): Rustmeier, N.H. , Stehle, T. , Stroh, L.J.