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6XW7

Crystal structure of murine norovirus p domain in complex with nanobody nb-5829 and glycochenodeoxycholate (gcdca)

PDB DOI: 10.2210/pdb6xw7/pdb

Classification: VIRAL PROTEIN
Organism(s): Murine Norovirus 1 , Vicugna Pacos

Deposited: 2020-01-23
Deposition Author(s): Hansman, G. , Kilic, T. , Sabin, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å

6xw7
Literature

Crystal structure of murine norovirus p domain in complex with nanobody nb-5829 and glycochenodeoxycholate (gcdca)

Hansman, G. , Kilic, T. , Sabin, C.

Primary Citation of Related Structures: 6XW7


Proteins
Molecule Chains Sequence Length Organism Sequence
Capsid protein A 309 Murine Norovirus 1 , Vicugna Pacos SIYRMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNGRVHVDGTLLGTTPISGSWVSCFAAEAAYKFQSGTGEVATFTLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTGDKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLVDGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGEVLLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFTVQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYSGSGPLTFPTDGIFEVVSWVPRLYQLASVGSL
Capsid protein B 309 Murine Norovirus 1 , Vicugna Pacos SIYRMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNGRVHVDGTLLGTTPISGSWVSCFAAEAAYKFQSGTGEVATFTLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTGDKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLVDGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGEVLLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFTVQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYSGSGPLTFPTDGIFEVVSWVPRLYQLASVGSL
Capsid protein E 309 Murine Norovirus 1 , Vicugna Pacos SIYRMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNGRVHVDGTLLGTTPISGSWVSCFAAEAAYKFQSGTGEVATFTLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTGDKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLVDGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGEVLLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFTVQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYSGSGPLTFPTDGIFEVVSWVPRLYQLASVGSL
Capsid protein F 309 Murine Norovirus 1 , Vicugna Pacos SIYRMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNGRVHVDGTLLGTTPISGSWVSCFAAEAAYKFQSGTGEVATFTLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTGDKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLVDGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGEVLLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFTVQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYSGSGPLTFPTDGIFEVVSWVPRLYQLASVGSL
Nanobody NB-5829 C 123 Murine Norovirus 1 , Vicugna Pacos QVQLQESGGGLVEAGGSLRLSCLGSGLTFSRYAMGWFRQAPGKEREFVASITRSGGSPNYADSVKGRFTISRDNAKNTVYLQMSSLKPEDTAVYYCAGRGSVYYDVWGQGTQVTVSSHHHHHH
Nanobody NB-5829 D 123 Murine Norovirus 1 , Vicugna Pacos QVQLQESGGGLVEAGGSLRLSCLGSGLTFSRYAMGWFRQAPGKEREFVASITRSGGSPNYADSVKGRFTISRDNAKNTVYLQMSSLKPEDTAVYYCAGRGSVYYDVWGQGTQVTVSSHHHHHH
Nanobody NB-5829 G 123 Murine Norovirus 1 , Vicugna Pacos QVQLQESGGGLVEAGGSLRLSCLGSGLTFSRYAMGWFRQAPGKEREFVASITRSGGSPNYADSVKGRFTISRDNAKNTVYLQMSSLKPEDTAVYYCAGRGSVYYDVWGQGTQVTVSSHHHHHH
Nanobody NB-5829 H 123 Murine Norovirus 1 , Vicugna Pacos QVQLQESGGGLVEAGGSLRLSCLGSGLTFSRYAMGWFRQAPGKEREFVASITRSGGSPNYADSVKGRFTISRDNAKNTVYLQMSSLKPEDTAVYYCAGRGSVYYDVWGQGTQVTVSSHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2020-01-23
Deposition Author(s): Hansman, G. , Kilic, T. , Sabin, C.