PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6XN7

Structure of the lactococcus lactis csm ntr crispr-cas complex

PDB DOI: 10.2210/pdb6xn7/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Lactococcus Lactis Subsp. Lactis

Deposited: 2020-07-02
Deposition Author(s): Li, H. , Rai, J. , Sridhara, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.47 Å

Literature

Structure of the lactococcus lactis csm ntr crispr-cas complex

Li, H. , Rai, J. , Sridhara, S.

Primary Citation of Related Structures: 6XN7


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated protein Cas10 A 756 Lactococcus Lactis Subsp. Lactis MDKINLVCGSLLHNIGKIIYRGTSERAKHSKLGGDFIKSFEQFRNTELTDCIRYHHAQEITSVKSNKEKNSLFYITYIADNISSGMDRRKDLEEGAEGFNWDKKVALGSVFNVLNEKEKGRQNYSYPFVARTRIKEEPLNFPTATQNQYTTSYYDGLITDMKTILQRLKPDKEHINSLLQMMESLWSYVPSSTDKNQLVDISLYDHSRTTAAIASAIYDYFQAENITDYQKELFDYNATEFYDKNAFLMMNFDMSGVQNFIYNISGSKALKSLRARSFYLDMLLEYISDNLLEKLELSRANILYVGGGHAYLLLANTNKTKAILSDFEHDLKTWFLDKFKIDLYVAMAYTEVSANDLMNHNGHYRDIYRRLSQKTSAKKANRYTAEEILNLNHQGTENARECRECKRSDLLIEEDDICEICDSLQKVSRDLTRENIFVIANEGVLDMPFGKKMSALSYSQADKLKKSNAEVQIYAKNISEIGQNLMTRIDMGDYTYRSDFHEMLEEVEVGINRLGVLRADVDNLGQAFINGIPDDYLSISRTATFSRAMSRFFKNYLNQLLAEKSYKINVIYAGGDDLFMIGAWQDILDFSIVLKQKFADFTQNKLSISAGIGMFREKYPVARMASLTGDLEDAAKDYKPDERAVQATKNAVTLFDATNVFSWDTLENDIFVKLDAITKNFEKLDETGKAFIYRLIDLLRGVNENQQINIARLAYTLSRMEEKIGKTFAQELYNWANADRKTLIMALEIYILKTRE
CRISPR-associated protein Csm4 B 297 Lactococcus Lactis Subsp. Lactis MKIIKLYFESPVHFGEKRLSESKITFSADTLFSALMIEAVGLGKEDEFYQLASNNLVKFSDAFPFIDQYYYIPKPMFNLKLEKEDENPSKAFKKLLYVPIDSLEDYLSGGLDAYFERESFNLGKLALSEKVQQHDFKDSEPYNVGTFTFKENTGLYVLIEQTHPLLEELLENLQYSGIGGKRNSGYGKFKFEILEDSDIEDLFSAKGNRKILLSGALPKDAELEQALKNASYLLERRGGFVQSDTYATNLVKKQDLYVFKSGSTFENSFDGDIYQVGKKGNHPVYKYAKSFFLEVSV
CRISPR-associated protein Csm3 F 214 Lactococcus Lactis Subsp. Lactis MKLVIEGTIVLKTGMHIGGSSDFSAIGAVASPVVRDTLTRLPLIPGSSLKGKMRYLLAKELNNGILLNEPNNDQDEILRLFGSSEKDKIRRARLKFNDIKLSNLAELETFNVSSTEVKFENTINRKTAVANPRQIERVIAGSKFDFEIFYNLDDIKEVEKDFENIKQGFDLLEFDYLGGHGTRGSGRIAFENLSVITAVGNFEKINTLNEILGA
CRISPR-associated protein Csm3 H 214 Lactococcus Lactis Subsp. Lactis MKLVIEGTIVLKTGMHIGGSSDFSAIGAVASPVVRDTLTRLPLIPGSSLKGKMRYLLAKELNNGILLNEPNNDQDEILRLFGSSEKDKIRRARLKFNDIKLSNLAELETFNVSSTEVKFENTINRKTAVANPRQIERVIAGSKFDFEIFYNLDDIKEVEKDFENIKQGFDLLEFDYLGGHGTRGSGRIAFENLSVITAVGNFEKINTLNEILGA
CRISPR-associated protein Csm3 G 214 Lactococcus Lactis Subsp. Lactis MKLVIEGTIVLKTGMHIGGSSDFSAIGAVASPVVRDTLTRLPLIPGSSLKGKMRYLLAKELNNGILLNEPNNDQDEILRLFGSSEKDKIRRARLKFNDIKLSNLAELETFNVSSTEVKFENTINRKTAVANPRQIERVIAGSKFDFEIFYNLDDIKEVEKDFENIKQGFDLLEFDYLGGHGTRGSGRIAFENLSVITAVGNFEKINTLNEILGA
CRISPR-associated protein Csm3 I 214 Lactococcus Lactis Subsp. Lactis MKLVIEGTIVLKTGMHIGGSSDFSAIGAVASPVVRDTLTRLPLIPGSSLKGKMRYLLAKELNNGILLNEPNNDQDEILRLFGSSEKDKIRRARLKFNDIKLSNLAELETFNVSSTEVKFENTINRKTAVANPRQIERVIAGSKFDFEIFYNLDDIKEVEKDFENIKQGFDLLEFDYLGGHGTRGSGRIAFENLSVITAVGNFEKINTLNEILGA
CRISPR-associated protein Csm5 J 352 Lactococcus Lactis Subsp. Lactis MKKTYRVTLTALGPIFIGGGEKLKKYEYIFDKQKKVAHMIDHTKFTKYLLEKNLLDDFTSRVNSHFDLYDYLVNKKGIVFMPLVKYSVPVAQFRTEVKNRFGKPISSPPMNDLNTFVKDAFGRPYIPGSSLKGALRTAILNDLKEDTKENEVFAHLQVSDSETIDLENLKVYQKVDYSKTAKPLPLYRECLKPNTEITFTVSFDDEYLTLKKIQNALHKTYQHYYIKWLKGGKVGETLIKGVYDSHADELKKNTFALDQPSQNQGEIIYIGGGAGFVSKTLHYKSKNRDQARNDSFDILKQLFRTTYSKMRSVPDNVPVALKLAVETKTFNGRVTGKHYLEMGKARIKLEEL
CRISPR-associated protein Csm2 C 139 Lactococcus Lactis Subsp. Lactis TELKIGNEKVNSTNFGDFAEKAIRGINHKPFVNSKGGEQKITTSKIRGILELVNKVYNRVINTNDVELSENILADIAYIKVKIAYESGREPVVKDFIQRTAFTAAITDVMNQRTRESFLLFARYVESLIAYFKFYGGKD
CRISPR-associated protein Csm2 D 139 Lactococcus Lactis Subsp. Lactis TELKIGNEKVNSTNFGDFAEKAIRGINHKPFVNSKGGEQKITTSKIRGILELVNKVYNRVINTNDVELSENILADIAYIKVKIAYESGREPVVKDFIQRTAFTAAITDVMNQRTRESFLLFARYVESLIAYFKFYGGKD
CRISPR-associated protein Csm2 E 139 Lactococcus Lactis Subsp. Lactis TELKIGNEKVNSTNFGDFAEKAIRGINHKPFVNSKGGEQKITTSKIRGILELVNKVYNRVINTNDVELSENILADIAYIKVKIAYESGREPVVKDFIQRTAFTAAITDVMNQRTRESFLLFARYVESLIAYFKFYGGKD

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Crispr RNA r 37 NA ACGAGAACAUACGUUCUUUGAACCAAGCUUCAACUCC
Target RNA t 37 NA AGGAGUUGAAGCUUGGUUCAAAGAACGUAUGUUCUCG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-07-02
Deposition Author(s): Li, H. , Rai, J. , Sridhara, S.