6XKX
R. capsulatus ciii2civ tripartite super-complex, conformation a (sc-1a)
PDB DOI: 10.2210/pdb6xkx/pdb
Classification: TRANSLOCASE/Oxidoreductase Organism(s): Rhodobacter Capsulatus (Strain Atcc Baa-309 / Nbrc 16581 / Sb1003)
Deposited: 2020-06-27 Deposition Author(s): Braitbard, M. , Daldal, F. , Garcia, B.A. , Kim, H.J. , Murakami, K. , Ozturk, Y. , Schneidman-Duhovny, D. , Selamoglu, N. , Steimle, S. , Van Eeuwen, T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 6.1 Å
R. capsulatus ciii2civ tripartite super-complex, conformation a (sc-1a)
Braitbard, M. , Daldal, F. , Garcia, B.A. , Kim, H.J. , Murakami, K. , Ozturk, Y. , Schneidman-Duhovny, D. , Selamoglu, N. , Steimle, S. , Van Eeuwen, T.
Primary Citation of Related Structures: 6XKX
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ubiquinol-cytochrome c reductase iron-sulfur subunit | E | 191 | Rhodobacter Capsulatus (Strain Atcc Baa-309 / Nbrc 16581 / Sb1003) | MSHAEDNAGTRRDFLYHATAATGVVVTGAAVWPLINQMNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHYDSAGRIRKGPAPRNLDIPVAAFVDETTIKLG |
| Ubiquinol-cytochrome c reductase iron-sulfur subunit | R | 191 | Rhodobacter Capsulatus (Strain Atcc Baa-309 / Nbrc 16581 / Sb1003) | MSHAEDNAGTRRDFLYHATAATGVVVTGAAVWPLINQMNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHYDSAGRIRKGPAPRNLDIPVAAFVDETTIKLG |
| Cytochrome b | C | 437 | Rhodobacter Capsulatus (Strain Atcc Baa-309 / Nbrc 16581 / Sb1003) | MSGIPHDHYEPKTGIEKWLHDRLPIVGLVYDTIMIPTPKNLNWWWIWGIVLAFTLVLQIVTGIVLAMHYTPHVDLAFASVEHIMRDVNGGWAMRYIHANGASLFFLAVYIHIFRGLYYGSYKAPREITWIVGMVIYLLMMGTAFMGYVLPWGQMSFWGATVITGLFGAIPGIGPSIQAWLLGGPAVDNATLNRFFSLHYLLPFVIAALVAIHIWAFHTTGNNNPTGVEVRRTSKADAEKDTLPFWPYFVIKDLFALALVLLGFFAVVAYMPNYLGHPDNYVQANPLSTPAHIVPEWYFLPFYAILRAFAADVWVVILVDGLTFGIVDAKFFGVIAMFGAIAVMALAPWLDTSKVRSGAYRPKFRMWFWFLVLDFVVLTWVGAMPTEYPYDWISLIASTYWFAYFLVILPLLGATEKPEPIPASIEEDFNSHYGNPAE |
| Cbb3-type cytochrome c oxidase subunit CcoP,Cytochrome c-type cyt cy | P | 474 | Rhodobacter Capsulatus (Strain Atcc Baa-309 / Nbrc 16581 / Sb1003) | MSKKPTTKKEVQTTGHSWDGIEELNTPLPRWWLWTFYATIVWGVAYSIAMPAWPIFASGATPGILGSSTRADVEKDIAKFAEMNKAVEDKLVATDLTAIAADPELVTYTRNAGAAVFRTWCAQCHGAGAGGNTGFPSLLDGDWLHGGSIETIYTNIKHGIRDPLDPDTLPVANMPAHLTDELLEPAQIDDVVQYVLKISGQPADEARATAGQQVFADNCVSCHGEDAKGMVEMGAPNLTDGIWLYGGDANTITTTIQLGRGGVMPSWSWAADGAKPRLSEAQIRAVASYVHSLGGGQLFATRPATAVAVGADGKALLPSVDEAAMPAKAPAAAAPAAETAEAAAPAEPAAPPPPAYVEVDPATITGDAKAGEEKFNKTCKACHKIDGKNAVGPHLNGVIGRATATVEGFKYSTAMKNHVGNWTPERLDIYLVSPKAEVPGTKMSFVGLPEAADRANVIAYLNTLPRDYKDDDDK |
| Cytochrome c1 | D | 279 | Rhodobacter Capsulatus (Strain Atcc Baa-309 / Nbrc 16581 / Sb1003) | MKKLLISAVSALVLGSGAAFANSNVPDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVREYAAGLDTIIDKDSGEERDRKETDMFPTRVGDGMGPDLSVMAKARAGFSGPAGSGMNQLFKGMGGPEYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAAGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLYLTNKRLWAPYKGHKA |
| Cytochrome c1 | Q | 279 | Rhodobacter Capsulatus (Strain Atcc Baa-309 / Nbrc 16581 / Sb1003) | MKKLLISAVSALVLGSGAAFANSNVPDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVREYAAGLDTIIDKDSGEERDRKETDMFPTRVGDGMGPDLSVMAKARAGFSGPAGSGMNQLFKGMGGPEYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAAGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLYLTNKRLWAPYKGHKA |
| Cytochrome c oxidase, Cbb3-type, subunit I | N | 532 | Rhodobacter Capsulatus (Strain Atcc Baa-309 / Nbrc 16581 / Sb1003) | MWDYVKLVALGVVVAIAAYAASQARDLPYMVNMVEVALAAVIAFIWVLRTMGDAKPSKDEYFDGVIRAGVIATTFWGIVGFLVAVIIAFQLAFPALNLEFGNGMLNFGRLRPLHTSAVIFAFGGNALIASAFYVVQRTSAARLFGGTALGWFVFWGWQLIIVTAATSYLLGGSQGKEYAELNWHLDILVAIVWVAYLIAFLGTIFKRKEPHIYVANWFYLSFIVTIAMLHIVNNLAVPVSIFGTKSVQLMAGVQDAMTQWWYGHNAVGFFLTAGFLGMMYYFVPKQAERPVYSYKLSIVHFWALIFLYIWAGPHHLHYTALPDWASTLGMVMSVILWMPSWGGMINGLMTLSGAWDKLRTDPVIRMMVVSIGFYGMSTFEGPMMSIKAVNSLSHYTDWTIGHVHSGALGWNGMITFGMLYFLTPRLWGRSGLYSLKLVSWHFWLATIGIVLYASSMWVSGIMEGLMWREVDAQGFLVNGFADTVGAKFPMNVVRGVGGVLYLTGGLIMAYNLWATVAKQPKTANLAVAVPAE |
| Cytochrome c oxidase, Cbb3-type, subunit II | O | 242 | Rhodobacter Capsulatus (Strain Atcc Baa-309 / Nbrc 16581 / Sb1003) | MSIMDKHHVLEKNATLLLIFAFLVVTIGGIVEIAPLFYLENTIEKVEGMRPYTPLELTGRDIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGRYSDAWHVEHLSNPQSVVPESVMPSYSYLANVPLDSTWIEDRVSTDALVGVPYSAEMIAAAKADFVAQADPNADSATLVANYGEKVNIRNFDGKPGLTEMDALVAYLQVLGTMVDFSTFQPVASR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-06-27 Deposition Author(s): Braitbard, M. , Daldal, F. , Garcia, B.A. , Kim, H.J. , Murakami, K. , Ozturk, Y. , Schneidman-Duhovny, D. , Selamoglu, N. , Steimle, S. , Van Eeuwen, T.