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6XE0
Cryo-em structure of nusg-ctd bound to 70s ribosome (30s: nusg-ctd fragment)
PDB DOI: 10.2210/pdb6xe0/pdb
Classification: RIBOSOME Organism(s): Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6)
Deposited: 2020-06-11 Deposition Author(s): Acosta-Reyes, F.J. , Frank, J. , Gottesman, M.E. , Harvey, S. , Hashem, Y. , Knauer, S.H. , Li, W. , Shen, B. , Sun, M. , Washburn, R. , Zuber, P.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 6.8 Å
Cryo-em structure of nusg-ctd bound to 70s ribosome (30s: nusg-ctd fragment)
Acosta-Reyes, F.J. , Frank, J. , Gottesman, M.E. , Harvey, S. , Hashem, Y. , Knauer, S.H. , Li, W. , Shen, B. , Sun, M. , Washburn, R. , Zuber, P.
Primary Citation of Related Structures: 6XE0
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S2 | A | 218 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS |
| 30S ribosomal protein S11 | J | 117 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV |
| 30S ribosomal protein S12 | K | 123 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA |
| 30S ribosomal protein S13 | L | 114 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKP |
| 30S ribosomal protein S14 | M | 100 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW |
| 30S ribosomal protein S15 | O | 88 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR |
| 30S ribosomal protein S16 | P | 82 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA |
| 30S ribosomal protein S17 | Q | 80 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAV |
| 30S ribosomal protein S18 | R | 55 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | EIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRH |
| 30S ribosomal protein S19 | S | 79 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYR |
| 30S ribosomal protein S20 | T | 85 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA |
| 30S ribosomal protein S3 | B | 206 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEI |
| 30S ribosomal protein S21 | U | 51 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | IKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVK |
| Transcription termination/antitermination protein NusG | V | 181 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA |
| 30S ribosomal protein S4 | C | 205 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK |
| 30S ribosomal protein S5 | D | 150 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGK |
| 30S ribosomal protein S6 | E | 100 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEAS |
| 30S ribosomal protein S7 | F | 151 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | PRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFA |
| 30S ribosomal protein S8 | G | 129 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA |
| 30S ribosomal protein S9 | H | 127 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | NQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR |
| 30S ribosomal protein S10 | I | 98 | Adineta Vaga , Helicobacter Pylori Bacteriophage Khp30 , Sphingobium Sp. (Strain Nbrc 103272 / Syk-6) | RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16s rRNA | w | 1539 | NA | AAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2020-06-11 Deposition Author(s): Acosta-Reyes, F.J. , Frank, J. , Gottesman, M.E. , Harvey, S. , Hashem, Y. , Knauer, S.H. , Li, W. , Shen, B. , Sun, M. , Washburn, R. , Zuber, P.